Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13580 469 / 2e-168 LOH3, LAG13 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) AT3G25540 446 / 3e-159 LAG1 LONGEVITY ASSURANCE GENE 1, TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) AT1G26200 357 / 5e-124 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) AT3G19260 236 / 5e-77 LOH2, LAG1 HOMOLOG 2, LAG1 HOMO, LAG1HOMOLOG2 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029096 [exp] 588 / 0 AT1G13580 487 / 2e-175 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10030571 [exp] 526 / 0 AT1G13580 491 / 2e-176 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10030918 [exp] 525 / 0 AT1G13580 490 / 4e-176 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10007964 [exp] 332 / 3e-114 AT1G13580 383 / 3e-134 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10013494 [exp] 326 / 8e-112 AT1G13580 381 / 1e-133 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10019859 [exp] 219 / 5e-70 AT3G19260 343 / 7e-119 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1) Lus10014055 [exp] 208 / 7e-66 AT3G19260 316 / 2e-108 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134700 [exp] 486 / 6e-175 AT1G13580 444 / 1e-158 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Potri.008G113900 [exp] 478 / 4e-172 AT1G13580 438 / 4e-156 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Potri.015G055000 [exp] 409 / 1e-144 AT1G13580 378 / 3e-132 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Potri.009G101800 [exp] 248 / 1e-81 AT3G19260 334 / 2e-115 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1) Potri.004G141000 [exp] 242 / 3e-79 AT3G19260 364 / 2e-127 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03798 [flax] [poplar] TRAM_LAG1_CLN8 TLC domain
Representative CDS sequence Show only first row Show all	>Lus10013063 pacid=23149855 polypeptide=Lus10013063 locus=Lus10013063.g ID=Lus10013063.BGIv1.0 annot-version=v1.0 ATGGCATTCGCCGAGATTCTGGGTTCGATTGACTGGGAGCATGAATCGTATCCAGCTTACCAAGACTACATTGTTCTTCCTGCTCTTGCTCTCTTCTTCC CCACCGTCCGATTCCTTCTTGACAGATTCGTGTTTGAGAAAATAGGAAGGAGAATGATCTTTGGAAAGGGATACCATATTGTGAAGGATGAGGTAGAGGA CAGAAAGAAGATAAGAAAGTTCAAAGAATCGGCCTGGAAATGCGTTTACTATCTATCAGCAGAGATTTTGGCTCTCACTGTCACATATAATGAGCTCTGG TTTACCAACACGAGGTTCTTTTGGGTCGGACCGGGAGATCAAGTGTGGCCGGATCAACAAATGAAGTTGAAGCTGAAAGGTCTGTATATGTATACTGCTG GATTTTATACGTACTCCATATTCGCTCTCATATTTTGGGAAACGAGACGTGCCGACTTTGGAGTCTCCATGGGCCATCATGTTGCCACTGTCATTCTCAT TGTTATGTCCTACATATTAAGATTCGGTCGTGCTGGTTCAATTGTCTTAGCTATTCACGATGCCAGCGATGTATTTTTGGAGGTGGGGAAGATGTCCAAG TATAGTGGCGCCGAAGGGATAGCGAGCTGTGCATTTATTCTTTTCGTATTCTCCTGGATCTTGCTACGGCTCATTTACTATCCATTTTGGATCCTCTGGA GTACAAGCTATGAAGTTGTGACAATCTTGGACATGAAGAAACACGAGAGGGATGGTCCGATCTTTTACTACGTGTTTAATTCTCTTCTGTACTGCTTACT AGTGCTCCACATATATTGGTGGGTTTTGATTTATCGGATGCTGGTTAAGCAAATCCAAGCCAGAGGACAGCTAAGTGATGATGTTCGATCTGGTTAG
AA sequence Show only first row Show all	>Lus10013063 pacid=23149855 polypeptide=Lus10013063 locus=Lus10013063.g ID=Lus10013063.BGIv1.0 annot-version=v1.0 MAFAEILGSIDWEHESYPAYQDYIVLPALALFFPTVRFLLDRFVFEKIGRRMIFGKGYHIVKDEVEDRKKIRKFKESAWKCVYYLSAEILALTVTYNELW FTNTRFFWVGPGDQVWPDQQMKLKLKGLYMYTAGFYTYSIFALIFWETRRADFGVSMGHHVATVILIVMSYILRFGRAGSIVLAIHDASDVFLEVGKMSK YSGAEGIASCAFILFVFSWILLRLIYYPFWILWSTSYEVVTILDMKKHERDGPIFYYVFNSLLYCLLVLHIYWWVLIYRMLVKQIQARGQLSDDVRSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10013063 [exp]	0	1
AT4G34770			SAUR-like auxin-responsive pro...		Lus10007562 [exp]	5.3	0.9154
AT5G20110			Dynein light chain type 1 fami...		Lus10014484 [exp]	6.1	0.9193
AT2G27920		SCPL51	serine carboxypeptidase-like 5...		Lus10035555 [exp]	7.9	0.8715
					Lus10024121 [exp]	11.8	0.9088
AT5G45580	GARP		Homeodomain-like superfamily p...		Lus10012142 [exp]	14.5	0.8915
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10034548 [exp]	15.2	0.9147
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10004331 [exp]	16.3	0.9055
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10023610 [exp]	16.7	0.8864
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020115 [exp]	19.6	0.9042
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Lus10017558 [exp]	20.5	0.8271

Compare expression of checked genes

Lus10013063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.