Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25545 319 / 2e-110 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029095 [exp] 511 / 0 AT3G25545 317 / 1e-109 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134600 [exp] 353 / 8e-124 AT3G25545 271 / 1e-91 unknown protein Potri.008G110700 [exp] 338 / 9e-118 AT3G25545 247 / 6e-82 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013064 pacid=23149821 polypeptide=Lus10013064 locus=Lus10013064.g ID=Lus10013064.BGIv1.0 annot-version=v1.0 ATGGAAGATGTGATTACAGAAATTCCACCTCCTTCAAGATTCTTCCAGGAAGATCTCAACAACTTTGCACCTCCATCGGAGCCTCTTCCTTCCCCTTTCC TCGTGTTATCAAATCCTAAAACCGACCAACCCCTCCGCCCTTCTCTTTTGGTCGTGGCTATATCGTCACCATCTTTATATCTCTTCCATAACCTGAGCAA GAAGACTCTGCTTGGAAGCCTCGTACTACCTGAGATCCCTTTCTCGGGAAACTCTATCGAACCAGCACTCAGTGACAAATCCTGCAATATATATGCCCTC GGAGATGCTGCTGATAATTCGACTCTCCTAGTGTCGGTTCAGTGCTCGGTCAGTGCTGACCGCTCCAATATAGTTTCCAAACTGCTTCTTGGCAACCGAA TCGTTCCGGAAAGGGTTCTGATTTTAGGTTCGGTTCAGAGCCAGAATTTCCGGGGGAAGCTCTCCCCGGACGAGACTTATGCATTCAAGCTGGAGACTTT GGCAGAGAGGAAGAAAGGTTCGTCCTTACTGAAAGGACTTGACTATTTTCCATCGGGTAGCATGGTGGATGGCTTGGCGGCTGCAGTTTTTGCTCGATGC CAGATGAAGAAAGTCAGGGGAACTTTATGTGTCTCGTGGCCTGACCATGGGAGTTCGGTTATAACCCTGGTTAAATCTCTTCTGAAGAATGATGTACTGC ATGGATTCGATCTGAGTTCGACCGAAGACAGACATTTGAGGATAAACCAGATCATGGATCATCCTTTTGATTCTGACCTCTACACTTGA
AA sequence Show only first row Show all	>Lus10013064 pacid=23149821 polypeptide=Lus10013064 locus=Lus10013064.g ID=Lus10013064.BGIv1.0 annot-version=v1.0 MEDVITEIPPPSRFFQEDLNNFAPPSEPLPSPFLVLSNPKTDQPLRPSLLVVAISSPSLYLFHNLSKKTLLGSLVLPEIPFSGNSIEPALSDKSCNIYAL GDAADNSTLLVSVQCSVSADRSNIVSKLLLGNRIVPERVLILGSVQSQNFRGKLSPDETYAFKLETLAERKKGSSLLKGLDYFPSGSMVDGLAAAVFARC QMKKVRGTLCVSWPDHGSSVITLVKSLLKNDVLHGFDLSSTEDRHLRINQIMDHPFDSDLYT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25545			unknown protein		Lus10013064 [exp]	0	1
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Lus10039636 [exp]	2.4	0.9383
AT1G30580			GTP binding (.1)		Lus10038543 [exp]	5.2	0.9049
AT4G35630		PSAT	phosphoserine aminotransferase...		Lus10005333 [exp]	5.5	0.9181
AT5G06660			Protein of unknown function DU...		Lus10029308 [exp]	7.7	0.9226
AT3G18190			TCP-1/cpn60 chaperonin family ...		Lus10026151 [exp]	12.2	0.9112
AT5G59410			Rab5-interacting family protei...		Lus10016530 [exp]	13.0	0.9141
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10007579 [exp]	16.6	0.8954
AT5G42790		ARS5, ATPSM30, ...	ARSENIC TOLERANCE 5, proteasom...		Lus10007396 [exp]	20.4	0.9074
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10005445 [exp]	20.9	0.8680
AT2G28720			Histone superfamily protein (....		Lus10028826 [exp]	21.8	0.8922

Compare expression of checked genes

Lus10013064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.