Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68850 430 / 5e-152 Peroxidase superfamily protein (.1) AT4G36430 308 / 4e-104 Peroxidase superfamily protein (.1) AT2G18150 295 / 5e-99 Peroxidase superfamily protein (.1) AT2G18140 286 / 2e-95 Peroxidase superfamily protein (.1) AT5G19890 285 / 3e-95 Peroxidase superfamily protein (.1) AT5G05340 285 / 6e-95 Peroxidase superfamily protein (.1) AT5G66390 284 / 2e-94 Peroxidase superfamily protein (.1) AT5G06730 281 / 3e-93 Peroxidase superfamily protein (.1) AT1G44970 280 / 6e-93 Peroxidase superfamily protein (.1) AT5G06720 278 / 3e-92 ATPA2 peroxidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029094 [exp] 631 / 0 AT1G68850 439 / 1e-155 Peroxidase superfamily protein (.1) Lus10010634 [exp] 300 / 8e-101 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1) Lus10041784 [exp] 293 / 3e-98 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10006534 [exp] 291 / 1e-97 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10034207 [exp] 284 / 1e-94 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10009937 [exp] 282 / 4e-94 AT5G05340 347 / 6e-120 Peroxidase superfamily protein (.1) Lus10009900 [exp] 282 / 5e-94 AT1G14550 436 / 1e-154 Peroxidase superfamily protein (.1) Lus10000346 [exp] 284 / 2e-93 AT5G05340 394 / 8e-137 Peroxidase superfamily protein (.1) Lus10029065 [exp] 281 / 3e-93 AT5G05340 338 / 2e-115 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134500 [exp] 462 / 9e-165 AT1G68850 459 / 2e-163 Peroxidase superfamily protein (.1) Potri.008G110600 [exp] 459 / 3e-163 AT1G68850 488 / 9e-175 Peroxidase superfamily protein (.1) Potri.001G145800 [exp] 296 / 2e-99 AT2G35380 458 / 6e-163 Peroxidase superfamily protein (.1.2) Potri.014G143200 [exp] 295 / 3e-99 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 293 / 2e-98 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.007G019300 [exp] 291 / 1e-97 AT5G66390 507 / 0.0 Peroxidase superfamily protein (.1) Potri.005G118700 [exp] 290 / 4e-97 AT5G66390 504 / 0.0 Peroxidase superfamily protein (.1) Potri.001G458900 [exp] 288 / 3e-96 AT1G14540 389 / 3e-136 Peroxidase superfamily protein (.1) Potri.002G031200 [exp] 288 / 4e-96 AT1G44970 492 / 6e-176 Peroxidase superfamily protein (.1) Potri.010G236850 [exp] 285 / 4e-95 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10013065 pacid=23149832 polypeptide=Lus10013065 locus=Lus10013065.g ID=Lus10013065.BGIv1.0 annot-version=v1.0 ATGGCGCTCTCCAACTCCTTTGTGTTCGTCATGTTCATCATCTTCGTCGCATTTCCCAGTAGATTGATTGCTGGAGAGTTAACTCTGGACTACTATTCCG AAACTTGCCCCACGGTGTTTGGGGTTGTCAGGAAAGAAATGGAATGTGTTGTGCTTTCTGATCCTCGTAATGCTGCTAAGGTTATCAGGCTCCACTTCCA CGACTGTTTTGTCCAGGGATGTGACGGGTCTATTCTGCTAGACGATACACTGATGCTGAAAGGCGAAAAATCAGCCACCCCGAACGCGAAATCACTCAAA GGGTTCGAGATTATCGACAGTATTAAGAACAAAGTCGAATCCGATTGTCCCGGTGTCGTTTCTTGTGCCGATATCCTTGCACTGGCTGCTAGGGATGCAA CAGTTCTGGTTGGTGGACCTGATTGGGAGATGTATTTAGGAAGAAAAGATTCAAGAACCGCGAGCTACGAGCTTGCAGATTCGAATCTCCCGCTTCCAAC CGAGGGTCTCTTGTCGATCATATCAAAGTTCATTTACCAGGGACTCTCTGTTACAGACATGGTTGCTCTCTCAGGGTCCCACACGATAGGGATGGCTCGG TGCGAGAGCTACAGGGACAGGATCCACGGGGACTACGAGGTGACATCGGACGAATCTCCGGCCTCGGAGTCCCACCTCAAAGATCTGAAGGCCACATGTC CGGCAGCTGGTGGCGAAGACGACACTGTCTCCCCGATGGACTACGAGAGTCCGAACCTATTCGACAATTCCTACTTCCGTATTTTGTTGAGAGGAGAGGG ACTCCTCAATTCCGACCAGGAGCTCTACTCCAGCATCCTCGGGATGCAGACAAAGCAGCTCGTGATCCAATACGCTCATGACTCAGTCGGGTTTTTCGAG CAGTTCGCCCAGTCTATGGTCAGGATGGGGAACATTACTAATGAGGTTGATGCCGGGGAGGTCAGGAGGACCTGCCGATTTGTTAACATTTGA
AA sequence Show only first row Show all	>Lus10013065 pacid=23149832 polypeptide=Lus10013065 locus=Lus10013065.g ID=Lus10013065.BGIv1.0 annot-version=v1.0 MALSNSFVFVMFIIFVAFPSRLIAGELTLDYYSETCPTVFGVVRKEMECVVLSDPRNAAKVIRLHFHDCFVQGCDGSILLDDTLMLKGEKSATPNAKSLK GFEIIDSIKNKVESDCPGVVSCADILALAARDATVLVGGPDWEMYLGRKDSRTASYELADSNLPLPTEGLLSIISKFIYQGLSVTDMVALSGSHTIGMAR CESYRDRIHGDYEVTSDESPASESHLKDLKATCPAAGGEDDTVSPMDYESPNLFDNSYFRILLRGEGLLNSDQELYSSILGMQTKQLVIQYAHDSVGFFE QFAQSMVRMGNITNEVDAGEVRRTCRFVNI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68850			Peroxidase superfamily protein...		Lus10013065 [exp]	0	1
AT2G48140		EDA4	embryo sac development arrest ...		Lus10014683 [exp]	1.0	0.9737
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10018217 [exp]	1.4	0.9692
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Lus10032096 [exp]	1.7	0.9672
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10026331 [exp]	3.5	0.9593
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10019095 [exp]	3.9	0.9603
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10040687 [exp]	4.0	0.9659
AT3G01420		PADOX-1, ALPHA-...	plant alpha dioxygenase 1, alp...		Lus10039436 [exp]	5.2	0.9036
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10009669 [exp]	5.6	0.8987
					Lus10013619 [exp]	5.9	0.8939
AT5G14230			unknown protein		Lus10036989 [exp]	6.2	0.8902

Compare expression of checked genes

Lus10013065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.