Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64940 460 / 2e-158 CYP89A6 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) AT2G12190 451 / 5e-155 CYP89A4 Cytochrome P450 superfamily protein (.1) AT1G64950 451 / 7e-155 CYP89A5 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) AT1G64930 440 / 1e-150 CYP89A7 "cytochrome P450, family 87, subfamily A, polypeptide 7", cytochrome P450, family 87, subfamily A, polypeptide 7 (.1) AT5G61320 418 / 3e-142 CYP89A3 "cytochrome P450, family 89, subfamily A, polypeptide 3", cytochrome P450, family 89, subfamily A, polypeptide 3 (.1) AT3G03470 416 / 3e-141 CYP89A9 "cytochrome P450, family 87, subfamily A, polypeptide 9", cytochrome P450, family 87, subfamily A, polypeptide 9 (.1) AT1G64900 412 / 9e-140 CYP89A2 "cytochrome P450, family 89, subfamily A, polypeptide 2", cytochrome P450, family 89, subfamily A, polypeptide 2 (.1) AT5G04630 292 / 4e-93 CYP77A9 "cytochrome P450, family 77, subfamily A, polypeptide 9", cytochrome P450, family 77, subfamily A, polypeptide 9 (.1) AT1G11600 288 / 2e-91 CYP77B1 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) AT3G10560 286 / 7e-91 CYP77A7, UNE9 UNFERTILIZED EMBRYO SAC 9, CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 7, Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020353 [exp] 471 / 1e-162 AT1G64940 572 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10028654 [exp] 458 / 9e-158 AT1G64940 562 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10002138 [exp] 432 / 4e-147 AT1G64940 586 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10010229 [exp] 430 / 2e-146 AT1G64940 574 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020359 [exp] 428 / 6e-146 AT1G64940 550 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020360 [exp] 426 / 6e-145 AT1G64940 613 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10034156 [exp] 306 / 4e-98 AT5G04660 679 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) Lus10007660 [exp] 296 / 2e-94 AT1G11600 706 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10018351 [exp] 275 / 7e-86 AT1G11600 662 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G104600 [exp] 588 / 0 AT1G64940 455 / 2e-156 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.007G088086 [exp] 503 / 2e-175 AT1G64950 636 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G087950 [exp] 498 / 2e-173 AT1G64950 642 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G088154 [exp] 493 / 3e-171 AT1G64950 639 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G088018 [exp] 492 / 4e-171 AT1G64940 605 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.005G079600 [exp] 472 / 3e-163 AT1G64940 575 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.013G076600 [exp] 460 / 2e-158 AT1G64940 578 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.013G076700 [exp] 458 / 9e-158 AT1G64940 592 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.001G330501 [exp] 439 / 4e-150 AT1G64940 569 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.008G099100 [exp] 426 / 5e-145 AT1G64940 540 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10013067 pacid=23149806 polypeptide=Lus10013067 locus=Lus10013067.g ID=Lus10013067.BGIv1.0 annot-version=v1.0 ATGGATCTCTGGCTCATCGTCGTCGCCATCCTCTGTATCGGAGCCTCCTTGTGTTCCCTCTTCACGTCCTTCTCCGCCAGAAACAACCTTCCCCCAAGTC CTCCGACTCTCCCAATCCTCGGAAACTTCCTACTTCTCCTCAAATCATCCAACAACTTCTCTACCCTTCTGCCTCTCCTCCGCCGACTAAGCGCAGAGCA TGGCCCGATCGTCACTCTCTACCTTGGCTCCCGCCCTTCCATCTTCATCACCTCCCGCGAAACCGCACATCAGGCTCTGGTTCGCTCCGGCTCCACCTTC GCGAGCCGTCCACCGGCCTTGGAGACCTCCCGGATAATTTTCACCAACCAGAACACCCTCGCCACTTCCCCTTACAACCCCACTTGGCGAGTTCTCCGCC AGAATTTCACCTCTATGCTCCACCCTTCACGGCTCGGCTTGTACTCCGATGGCCGGAGATGGACATTTGAACTCTTGAAGATGGGAATTACCGCTGAAAT AGGAGGGCCGATTCAAGTGATTGATCATTTCTACCATGCATTTTTCATCTTGCTTACCTACATGTGCTTCGGGGAGAAGCTTGAGCCAAAATTGGTGCTG GAGATTGAGAGAACTCAAAGGGCTACGATTGGGAATTTCATCCGGTTCAATGTCCTCAATTTCATGCCCGGAATGACCAAGATTTTGTTTCGAAACTTGT GGAACGAGCTGGTCGAAATCCGCCGTGGATTGGATGTTACTCTGCTTCCGTTGATCAAATCCCGGCAAAACAGAGGAGAAACGGATCCGGGTAGTAAATG CTACTTGGATTCGATCCTTGAGCTGCGAATACCCGACGGAGCTGGTGGAGAAAACAAGTTCACCGACGAGGAGCTGGTTAGTCTCTGCTCGGAGTTCCTC AACAGCGGGACCGACACTACGGTGACGACTCTCCAATGGGCGATGGCGAATTTGGTGAAGTACCAACCGATCCAGGCGAAGCTCCGGGAAGAAATCGACC GGGTGGTCCGACCCGGATCCGAGATCCGGGACGAGGATTTGAAGGAGATGCGGTACCTAAACGCTGTCGTTTTGGAGACTCTAAGGCGGCACCCGCCGGG GCATTTCATACTGCCGAGGGCGGTGACGGAGGACACGGAGCTAGGAGGGTACGACATTCCGAGGAACGCGATCATCAACGTGACGGTGGCGGATATGGGC TGGGACCCGGCGGTGTGGGAGGATCCGATGGAGTTTAAGCCGGAGAGGTTTTTGGGGGGAGGGGAGGAGTTTGATCTCAAGGGTGTGAAGGGGATTAAGA TGATGCCGTTTGGGGCTGGTCGGAGGGTTTGTCCGGCAATATTGGTGGCGATTCTGCATCTCGAGTGGTTCGTGGCGAATTTGGTGAGAGAGTTTGAGTG GCAGCCGGTAGAGGGGAAGGAGGTTGATTTGTCGGAGAAGCAAGATTTCACGACCGGAATGAAGTACCCGCTCAAAGTGATCGCTACTCCGAGGAATAAC GATCATTTTGAGTAG
AA sequence Show only first row Show all	>Lus10013067 pacid=23149806 polypeptide=Lus10013067 locus=Lus10013067.g ID=Lus10013067.BGIv1.0 annot-version=v1.0 MDLWLIVVAILCIGASLCSLFTSFSARNNLPPSPPTLPILGNFLLLLKSSNNFSTLLPLLRRLSAEHGPIVTLYLGSRPSIFITSRETAHQALVRSGSTF ASRPPALETSRIIFTNQNTLATSPYNPTWRVLRQNFTSMLHPSRLGLYSDGRRWTFELLKMGITAEIGGPIQVIDHFYHAFFILLTYMCFGEKLEPKLVL EIERTQRATIGNFIRFNVLNFMPGMTKILFRNLWNELVEIRRGLDVTLLPLIKSRQNRGETDPGSKCYLDSILELRIPDGAGGENKFTDEELVSLCSEFL NSGTDTTVTTLQWAMANLVKYQPIQAKLREEIDRVVRPGSEIRDEDLKEMRYLNAVVLETLRRHPPGHFILPRAVTEDTELGGYDIPRNAIINVTVADMG WDPAVWEDPMEFKPERFLGGGEEFDLKGVKGIKMMPFGAGRRVCPAILVAILHLEWFVANLVREFEWQPVEGKEVDLSEKQDFTTGMKYPLKVIATPRNN DHFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10013067 [exp]	0	1
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10028594 [exp]	1.7	0.9350
AT2G44800			2-oxoglutarate (2OG) and Fe(II...		Lus10018949 [exp]	2.0	0.9056
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001009 [exp]	2.0	0.9197
AT4G20860			FAD-binding Berberine family p...		Lus10038446 [exp]	3.0	0.9190
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10016413 [exp]	5.5	0.8945
AT5G52450			MATE efflux family protein (.1...		Lus10017949 [exp]	5.7	0.8400
					Lus10030114 [exp]	7.5	0.8584
AT5G48540			receptor-like protein kinase-r...		Lus10038227 [exp]	8.1	0.8985
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10026262 [exp]	8.4	0.8472
AT2G19130			S-locus lectin protein kinase ...		Lus10029802 [exp]	13.5	0.8629

Compare expression of checked genes

Lus10013067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.