Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21200 368 / 1e-126 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) AT1G50960 279 / 1e-91 ATGA2OX7 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 7, gibberellin 2-oxidase 7 (.1) AT5G58660 173 / 2e-50 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 166 / 8e-48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 159 / 2e-44 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G55970 156 / 5e-44 ATJRG21 jasmonate-regulated gene 21 (.1) AT3G47190 155 / 6e-44 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25420 155 / 2e-43 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 153 / 6e-43 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19010 150 / 6e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029081 [exp] 617 / 0 AT4G21200 365 / 3e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10012912 [exp] 541 / 0 AT4G21200 368 / 2e-127 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10030567 [exp] 540 / 0 AT4G21200 370 / 2e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10007640 [exp] 364 / 6e-125 AT4G21200 429 / 1e-151 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10006759 [exp] 357 / 4e-122 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10018372 [exp] 355 / 1e-121 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10004808 [exp] 169 / 5e-49 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005037 [exp] 162 / 4e-46 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10040112 [exp] 162 / 5e-46 AT1G17020 332 / 1e-112 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G096800 [exp] 497 / 2e-177 AT4G21200 362 / 8e-125 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.008G145300 [exp] 488 / 1e-173 AT4G21200 354 / 1e-121 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.004G022800 [exp] 375 / 4e-129 AT4G21200 441 / 7e-156 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G026700 [exp] 362 / 2e-124 AT4G21200 444 / 1e-157 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.001G418200 [exp] 334 / 2e-113 AT4G21200 369 / 8e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G134000 [exp] 304 / 1e-101 AT4G21200 340 / 1e-116 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G134100 [exp] 291 / 2e-96 AT4G21200 324 / 2e-110 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.001G278200 [exp] 207 / 5e-64 AT5G58660 312 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 174 / 6e-51 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 162 / 2e-46 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10013069 pacid=23149815 polypeptide=Lus10013069 locus=Lus10013069.g ID=Lus10013069.BGIv1.0 annot-version=v1.0 ATGCGTCATAGACCAAGTCTGAGAGAGCTTTTAGACCATTCCAGAGTGAAAACCCTCTCCAATTGCCAACTGTCATCCTCTGAGAGGAGCCTTCCTCTCT TCTTTGTTCTCTTCTCCTTGGTGTTCTTCCTCACTCCCGCCCTTTCTCCCCTCTTCCCTTATTTAACCACCCCCCCCCCCCTCCACCCCTCCCCTCCTCC TCCTCCTCCTTCCCTTCAACATCACCATGACCACCCTCCTCCTGCCCTTGTTATGGAGGAATGTCAGCTGCCGCTGATAGACCTCAGCGATCTGAGCAGC TGCGACGAAAAGGTGAGAGCAGACTGTGCAGCTGCTATATGCAGAGCCTCGTCTGAGTGGGGATTCTTTCAGGTGGTGAACCACGGAATCCACCCGGAGC TGGTTAGTAAGATGAAGGAAGAGCAAGCGAAGTTGTTCCAATTGCCTTTTGATAAGAAGGTGAATAGTGGGCTTTTGAACAACTCTTACAGATGGGGAAC ACCAACGGCTACCTGCCCGAAGCAGTTGTCGTGGTCCGAGGCTTTCCACGTTCCTCTGTCGAAGATTTCGCAGGAGGACTGCTATGGGGAGTTCACTTCT CTAAGGAAAGTGATGGTGGAATTCGCAGAAGCAATGTCGAAGCTAGCAGGAGTGCTTGCAGGGGTCTTAGCAGAAAACTTGGGCCATTCAAGTGGGAATT TCGCAGACATCTGTCAAGAGAGCAGTTGCTTTCTTCGACTGAACCGATATCCAGCTTGCCCGATGTCTCCGGAGATTTTTCGTTTAGTACCTCATACTGA CAGTGATTTCCTCACTATTCTGTCTCAAGATCAAGTAGGAGGACTCCAACTCATGAAGGACTCCAGATGGGTGGCTGTAAAACCTAATCAAGATGCACTG ATAGTAAACATTGGAGATCTTTTTCAGGCATGGAGTAACGACATTTATAAGAGTGTGGAACACAAGGTTATGGCAAACGCTAAGACGGAAAGATACTCCA CTGCCTATTTTTTGTGTCCTTCATACGAGACATCAATCGAGAGTTACAGAGAACCATCCAACTACAGGAAATTCACCTTTGGAGAGTACAGGAGCCAAAT CCAAGAAGATGTCAAGAAACATGGTCACAAAATCGGCCTTCCAAGCTTTCGAACTGGACCATGA
AA sequence Show only first row Show all	>Lus10013069 pacid=23149815 polypeptide=Lus10013069 locus=Lus10013069.g ID=Lus10013069.BGIv1.0 annot-version=v1.0 MRHRPSLRELLDHSRVKTLSNCQLSSSERSLPLFFVLFSLVFFLTPALSPLFPYLTTPPPLHPSPPPPPPSLQHHHDHPPPALVMEECQLPLIDLSDLSS CDEKVRADCAAAICRASSEWGFFQVVNHGIHPELVSKMKEEQAKLFQLPFDKKVNSGLLNNSYRWGTPTATCPKQLSWSEAFHVPLSKISQEDCYGEFTS LRKVMVEFAEAMSKLAGVLAGVLAENLGHSSGNFADICQESSCFLRLNRYPACPMSPEIFRLVPHTDSDFLTILSQDQVGGLQLMKDSRWVAVKPNQDAL IVNIGDLFQAWSNDIYKSVEHKVMANAKTERYSTAYFLCPSYETSIESYREPSNYRKFTFGEYRSQIQEDVKKHGHKIGLPSFRTGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10013069 [exp]	0	1
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10017830 [exp]	1.0	0.8769
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10029081 [exp]	2.0	0.8373
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10030567 [exp]	3.0	0.7813
AT5G67220			FMN-linked oxidoreductases sup...		Lus10041598 [exp]	4.2	0.7445
AT3G62930			Thioredoxin superfamily protei...		Lus10029440 [exp]	7.0	0.7259
AT1G33560		ADR1	ACTIVATED DISEASE RESISTANCE 1...		Lus10032759 [exp]	7.2	0.7602
					Lus10013898 [exp]	20.2	0.7523
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10003394 [exp]	27.3	0.6908
AT3G50940			P-loop containing nucleoside t...		Lus10015802 [exp]	28.7	0.7235
AT3G46450			SEC14 cytosolic factor family ...		Lus10005452 [exp]	29.2	0.6992

Compare expression of checked genes

Lus10013069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.