Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029080 [exp] 310 / 9e-109 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G145400 [exp] 67 / 1e-13 AT3G17890 / unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013070 pacid=23149871 polypeptide=Lus10013070 locus=Lus10013070.g ID=Lus10013070.BGIv1.0 annot-version=v1.0 ATGACGGGAAACACACGCCGGCTGCCATCCTGGATGATGCCGCCGCCTCCGCCACCAGCATCACAACCTTCTGCTGATACCGTTGATGCCGATGTAAAAC AACCCACGACGAAGAGTAATCGAGGAGGACGTCGCAAGGTTCCGTCGACGACCAACGGCAACGCTACGAAGAAAAGGAAAGCTTCCAAACGAGACCCAAG TTCTGCTTCTCAAGCTTCTCCACACGCAGTCGAAGTTACGATTCCAATTGAGCCGTCGGATGAGGATTGCTCCCAATTTCTCACGGTTGAAGACCTAGTC TCCATCGCCAAGGAGTACGTTAGAGCTGCTGATGAAGAAGGATCAGAGCAGAGTCGATCTGTCAAGGGAGAATGCCAGTCGAGCACATCCTCTTTGGGCA ATGATTTGCTAGGCGTTGTTACTGTCAATAAACATAATTCACCAGCCAATCCTTGTAGTTCGAAGCAGAATCCGATGACAGAATCAATCCCCATCATTGT CAGTACAACGTCAACGGGGGATCCGGCTCAGGACATGTTGAATCTTTTTCTCGGGCCCTTGCTCACGAAACCGGTTGTGGATGACAAGAGGTGA
AA sequence Show only first row Show all	>Lus10013070 pacid=23149871 polypeptide=Lus10013070 locus=Lus10013070.g ID=Lus10013070.BGIv1.0 annot-version=v1.0 MTGNTRRLPSWMMPPPPPPASQPSADTVDADVKQPTTKSNRGGRRKVPSTTNGNATKKRKASKRDPSSASQASPHAVEVTIPIEPSDEDCSQFLTVEDLV SIAKEYVRAADEEGSEQSRSVKGECQSSTSSLGNDLLGVVTVNKHNSPANPCSSKQNPMTESIPIIVSTTSTGDPAQDMLNLFLGPLLTKPVVDDKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10013070 [exp]	0	1
AT3G05000			Transport protein particle (TR...		Lus10004135 [exp]	2.2	0.7723
AT5G56190			Transducin/WD40 repeat-like su...		Lus10021975 [exp]	4.7	0.7672
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10030002 [exp]	7.5	0.7617
AT1G25280	TUB	AtTLP10	tubby like protein 10 (.1.2.3)		Lus10043482 [exp]	13.3	0.7131
AT5G59830			unknown protein		Lus10040857 [exp]	13.5	0.7041
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10042859 [exp]	13.8	0.7372
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Lus10011116 [exp]	22.6	0.6923
AT5G05230			RING/U-box superfamily protein...		Lus10034237 [exp]	23.0	0.6570
AT5G52990			SNARE-like superfamily protein...		Lus10022397 [exp]	24.7	0.7213
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Lus10028257 [exp]	28.3	0.6638

Compare expression of checked genes

Lus10013070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.