Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65440 275 / 1e-78 GTB1 global transcription factor group B1 (.1.2.3) AT1G63210 217 / 3e-59 Transcription elongation factor Spt6 (.1) AT1G13570 100 / 3e-22 F-box/RNI-like superfamily protein (.1) AT5G22610 55 / 1e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G59250 52 / 7e-07 F-box/RNI-like superfamily protein (.1) AT2G39415 49 / 8e-07 F-box family protein (.1) AT3G58940 52 / 2e-06 F-box/RNI-like superfamily protein (.1) AT3G49150 51 / 2e-06 F-box/RNI-like superfamily protein (.1) AT3G59200 50 / 6e-06 F-box/RNI-like superfamily protein (.1) AT3G18150 48 / 2e-05 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029077 [exp] 530 / 0 AT1G13570 82 / 1e-16 F-box/RNI-like superfamily protein (.1) Lus10003130 [exp] 302 / 7e-88 AT1G65440 1938 / 0.0 global transcription factor group B1 (.1.2.3) Lus10011344 [exp] 301 / 1e-87 AT1G65440 1946 / 0.0 global transcription factor group B1 (.1.2.3) Lus10029078 [exp] 228 / 5e-71 AT1G65440 150 / 5e-43 global transcription factor group B1 (.1.2.3) Lus10034231 [exp] 176 / 2e-46 AT1G65440 426 / 2e-133 global transcription factor group B1 (.1.2.3) Lus10004851 [exp] 162 / 1e-43 AT1G13570 139 / 7e-37 F-box/RNI-like superfamily protein (.1) Lus10004852 [exp] 157 / 5e-41 AT1G13570 147 / 6e-39 F-box/RNI-like superfamily protein (.1) Lus10011048 [exp] 152 / 6e-40 AT1G13570 127 / 2e-32 F-box/RNI-like superfamily protein (.1) Lus10029079 [exp] 154 / 3e-38 AT1G65440 1451 / 0.0 global transcription factor group B1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G029200 [exp] 311 / 7e-91 AT1G65440 1961 / 0.0 global transcription factor group B1 (.1.2.3) Potri.006G031900 [exp] 299 / 7e-87 AT1G65440 1982 / 0.0 global transcription factor group B1 (.1.2.3) Potri.001G034300 [exp] 202 / 2e-54 AT1G65440 1251 / 0.0 global transcription factor group B1 (.1.2.3) Potri.017G107600 [exp] 79 / 2e-15 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.010G134200 [exp] 68 / 8e-12 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.011G121400 [exp] 61 / 2e-09 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G121500 [exp] 60 / 3e-09 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.014G163866 [exp] 58 / 1e-08 AT4G14103 79 / 2e-16 F-box/RNI-like superfamily protein (.1.2) Potri.014G039700 [exp] 54 / 2e-07 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 54 / 3e-07 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013071 pacid=23149819 polypeptide=Lus10013071 locus=Lus10013071.g ID=Lus10013071.BGIv1.0 annot-version=v1.0 ATGGAGCCCGGGAAAAGCGTGATTCGTCCAAGTGTTCGTGGCCCCTCGTTTCTGAGTCTTGCTTTGAAAGTTAACAATGGAGTTTATGCGCACAAAGAGA TAGTTGAGGGGGGTGAAGAGCACAAGGACATCACGAGTCTTCTACGCATCGGGACGACATTGAAGATCGGGGAGGACACTTTTGAGGATTTGGACGAGGT GATGGCTCGGTATGTCGATCCTCTTGTGGGTCACCTGAAATCTATGCTGAAGTTTCGCAAGTTCCGAAAGGGCACAGAGGCAGAAGTTGATGAGCTCCTG AAGATTGAGAAAGCCAAGTCTCCAGGGACGATAGCCTATTGCTTTGGCATTTCTCATAACTATCCAGGCACTTTCATTCTAACCTACATAACGTCTACAA ATCCACGTCACGAATACGTAGGCCTCTCCTCCAAGGGATTCAAGTTCCGCAAGCACGTGTTTGAGAAAATCGATGAGCTTGTCATTTACTTCAAGAACCA TCCCCAGCAAGAATCAGGGCCGTCCATTAGATCGAGGGCTGCCATGGTGCCGATGAGGAGCCACGCTTCTGGCAGAGACCGCCCTTCCGGTCATGCGAGC GGCATGCCATTGCCAAGGCCAAGGCTACACGATTGTGGACGAGGAAGAAATAAGTATAATAACAATCGACACGATTCTGGTTGTCATCGTCCGAGAAAGT GGGATTCTAGTTTCAGATTTGGTGATTTCTACATCAATGGCCGCCGTCGCCGTAGTAGTATCGCACAAAAAGATAGATTGAGTAACCTGCCCAATTGCTT AAAGGAGCACATCCTTACGTTTCTGCCGCTGCGTGATGCTGCCAGGACTTGCGTTTTGTCGACTGCTTGGTCCCACACATGGGAAAATCGTTCTTCGCTT GCGTTCGACTCCGATTTCACGCATCATTACACCCTCCATGGTGGTGACTGGGACAAATGGTTGCTGGCCGTCCACAAAGCGATGCGTTCACGCCGTGGAC CCTTGAAGGAATTCTCACTCTTTGCGCCTTTCGCTCTAGGCGGTCTTAGTATCGGCAAGATTCATCAGATTTTCCGCTCCTTGAACGGCATCGAGAGCTT GCACGTTGAGATTTTCAACTACCGAATCACCAAGCGTCATTTCGCTTCGCTTGCAAACCTGAAGAAGCTGAGTCTGAGTAACGTTATGTTGCCCCAGACT TCGAAAAATCAACTTTCGTTTGAGGGATTCAGAGTGATAACTGTTATTGTGTTTAACAGTGTAGCGATTCGGGGCCAACCAGAATCTGTACACTTTAAGT GTCCAATGCTCTCTGCTTTGACCCTGGACAATTTTGGTCATAATGTCAAGTACTTGTTTGAAATCCTGATTGAAGCACCTCAGCTCGTATTCTTCCACTT TGTCGGGGAAGTTGCGACCCTCTGGCTTAAGTCTACTCCTCTTCTCGGGAACGTTATACTCACTCCTTTAGATAGTTGTACTGGAGAACTTGAAAGGTTC AACAAAGTTTTTGGAGGTCTTTCCATGGTGGAGTCACTTGCCGTATCTGTTTCCATTTACTGTTATGTCTTCATGCTTTTGTACTATGTGCTTCCTCAGT ATCTTGCGAAACAGATAGAAAAGGGATACTCTTGCTCTGCCTTCTTGAAGCTAAACTATCTGAAGATGTCTTACTTGTGCTTGAATAGACGTGATTGTGT TCGAAGTGCCACTTTCTTGATCAAACTATGCCCCAATCTGAAAACATTAATTATCAAGATGAACTGCTTCGGGTTGTACCCTAAAGAGCCAAATGATGGT AATACTGCATCTTCCGAACTCAGAAGAATAATGAAGGAGCTTGATGACCAGAAGTACAAGTTGATGCTACTTGAGAAAGTGGAAATCAGTGAGTTCACAG GAACAGAAACAGAGATGGCATTCATCGGAATCCTGCTTGGAATTTCACCGTCTCTCCAATGCATGGAACTGAATCTGTTAACATCAGGAGATTTGTCTGT TGATATTAATAAGGTGCTATTTGTCGCCGAATTGTTTGAATTCCCCCGTGCATCGACAAACGCAACTATATCAATGAAAGCTCTGAAACGAAACTATACA CACAGTACTTGTTCATGTAAATAG
AA sequence Show only first row Show all	>Lus10013071 pacid=23149819 polypeptide=Lus10013071 locus=Lus10013071.g ID=Lus10013071.BGIv1.0 annot-version=v1.0 MEPGKSVIRPSVRGPSFLSLALKVNNGVYAHKEIVEGGEEHKDITSLLRIGTTLKIGEDTFEDLDEVMARYVDPLVGHLKSMLKFRKFRKGTEAEVDELL KIEKAKSPGTIAYCFGISHNYPGTFILTYITSTNPRHEYVGLSSKGFKFRKHVFEKIDELVIYFKNHPQQESGPSIRSRAAMVPMRSHASGRDRPSGHAS GMPLPRPRLHDCGRGRNKYNNNRHDSGCHRPRKWDSSFRFGDFYINGRRRRSSIAQKDRLSNLPNCLKEHILTFLPLRDAARTCVLSTAWSHTWENRSSL AFDSDFTHHYTLHGGDWDKWLLAVHKAMRSRRGPLKEFSLFAPFALGGLSIGKIHQIFRSLNGIESLHVEIFNYRITKRHFASLANLKKLSLSNVMLPQT SKNQLSFEGFRVITVIVFNSVAIRGQPESVHFKCPMLSALTLDNFGHNVKYLFEILIEAPQLVFFHFVGEVATLWLKSTPLLGNVILTPLDSCTGELERF NKVFGGLSMVESLAVSVSIYCYVFMLLYYVLPQYLAKQIEKGYSCSAFLKLNYLKMSYLCLNRRDCVRSATFLIKLCPNLKTLIIKMNCFGLYPKEPNDG NTASSELRRIMKELDDQKYKLMLLEKVEISEFTGTETEMAFIGILLGISPSLQCMELNLLTSGDLSVDINKVLFVAELFEFPRASTNATISMKALKRNYT HSTCSCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65440		GTB1	global transcription factor gr...		Lus10013071 [exp]	0	1
AT3G55460		SCL30, At-SCL30	SC35-like splicing factor 30 (...		Lus10002699 [exp]	8.5	0.8185
AT3G62330			Zinc knuckle (CCHC-type) famil...		Lus10010000 [exp]	10.0	0.8324
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10009823 [exp]	11.0	0.8259
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10041586 [exp]	11.8	0.8355
AT5G66130		ATRAD17	RADIATION SENSITIVE 17 (.1)		Lus10028430 [exp]	12.7	0.8200
AT1G70150			zinc ion binding (.1)		Lus10029210 [exp]	14.7	0.7663
AT1G16570			UDP-Glycosyltransferase superf...		Lus10026065 [exp]	17.3	0.7951
AT4G15950		RDM2, NRPE4, NR...	RNA-DIRECTED DNA METHYLATION 2...		Lus10038766 [exp]	17.5	0.8266
AT5G20040		ATIPT9	ARABIDOPSIS THALIANA ISOPENTEN...		Lus10027928 [exp]	18.9	0.8308
AT3G01800			Ribosome recycling factor (.1)		Lus10035226 [exp]	21.2	0.7929

Compare expression of checked genes

Lus10013071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.