Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10850 508 / 1e-172 Leucine-rich repeat protein kinase family protein (.1) AT1G60630 469 / 3e-157 Leucine-rich repeat protein kinase family protein (.1) AT5G67200 296 / 1e-90 Leucine-rich repeat protein kinase family protein (.1) AT3G50230 277 / 1e-83 Leucine-rich repeat protein kinase family protein (.1) AT5G43020 270 / 4e-81 Leucine-rich repeat protein kinase family protein (.1) AT2G26730 268 / 4e-80 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 251 / 7e-74 leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G48480 247 / 2e-72 RKL1 receptor-like kinase 1 (.1) AT4G23740 241 / 2e-70 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 239 / 1e-69 RLK902 receptor-like kinase 902 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029075 [exp] 1020 / 0 AT1G10850 825 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036426 [exp] 278 / 8e-84 AT5G67200 765 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10041101 [exp] 276 / 3e-83 AT5G67200 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017756 [exp] 258 / 2e-76 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10024803 [exp] 257 / 5e-76 AT5G43020 678 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002299 [exp] 245 / 2e-75 AT1G48480 433 / 5e-149 receptor-like kinase 1 (.1) Lus10018733 [exp] 254 / 5e-75 AT5G43020 687 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035012 [exp] 251 / 5e-74 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 251 / 6e-74 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G144900 [exp] 566 / 0 AT1G10850 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G097200 [exp] 562 / 0 AT1G10850 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G046900 [exp] 295 / 4e-90 AT5G43020 575 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G024400 [exp] 286 / 3e-87 AT5G43020 628 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G141200 [exp] 283 / 1e-85 AT5G67200 734 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G074300 [exp] 268 / 2e-80 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G086100 [exp] 262 / 2e-78 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.016G139200 [exp] 256 / 5e-76 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.006G117200 [exp] 256 / 1e-75 AT2G36570 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G035500 [exp] 254 / 3e-75 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10013073 pacid=23149854 polypeptide=Lus10013073 locus=Lus10013073.g ID=Lus10013073.BGIv1.0 annot-version=v1.0 ATGGAACCTCTGGTTTCGATCCGCCCACTCTTCTTCTTCTTCATCCTCCTGATAGCAATTTCTCCGGTCAGATCAACCGACTCAGAAGCACTATTAGCCT TGAAGTCAACCATTGACCGGTCAAACTCTCTCCCGACTTGGCAACCGTCCGCAGCCGCCAATGTCTGCAACTGGGAAGGAGTGAAGCAATGCCTCAACGG CAGAGTTACCAAGCTAGTAATCGAGATCCGTAACTTGACCGGCGAACTCGACTCCAAAATCCTGAACCGGTTGGACCAGCTCCGGGTACTGAGCTTCAAA TCCAACTCCATTTCTGGAAAAATCCCCGATCTCTCCGGTCTGGTCAATCTCAAATCTTTGTTCCTCAGCCAGAACAACTTCTCCGGTGGGTTCCCCGAGT CAGTCACGAAACTCCACCGTCTTAAAGTGGTCGTCCTCTCAGGGAATCAGCTCTCCGGCCCGATTCCTAACTCGCTGTTGGGTCTCGATCGGCTTTACGT CCTCTACTTGGAGGAGAATCAGTTTACCGGTTCGGTTCCTCCTCTTGGTCAAACCAGTCTCCGGTACTTCAATGTGTCCGGGAACCGCCTATCCGGTTCG ATTCCAGTTACTTCTGCTTTGGTCCGGTTCAATTCCAGCTCGTTCTCCGGCAATGCCGAGCTCTGTGGTGAACAGATTGGAAAACGGTGCTCTGATTTCA GTCCTTCTCCAAGCCCTGGTTCGTTATCTAGTTCAAAGAATCATCGGAGGAGGAGTAAATTGATCAAGATTATTGCTCTGGCCGCCGCCGGATTGGTGGT TTTGATTCTGGTAACGGCGGCGATTCTCGTCTGTTTATGTCGCCGGAGAGGAAAATCATCCGCTACATCGACCAGAAGCGTACCGAAAGGCGGCGGAGAT GGCGAAGTAGGGAGTTTGGAGAGCGGCGGGGGAGGAGGAGGCGGCGGAGGGAGTGGCGCGAGTGGTAATAATGGCGGGCGGCAAGGGGGATTTTCGTGGG AGAGAGGGGAGGGAATAGGGACGTTGGTGTTCCTCGGCGCAGGGGATCAGATCATGAGTTACAGCTTGGAGGATTTACTGAAGGCGTCAGCGGAGACTCT GGGGAGGGGTACGATGGGGAGCACGTACAAGGCCGTTATGGAGTCAGGGTTCATCGTGACCGTTAAAAGGTTGAAGGACGCGAGGTATCCTAGGGTGGAG GAGTTCAGGAGACAGATGGAGGTGATCGGACGGCTGAGACACCCCAACCTCGTCCCGCTCAGAGCTTATTTCCAGGCTAAGGAAGAGAGACTGCTCGTGT ACGATTACTTCCCCAACGGCAGCCTCTTCTCTCTCCTCCACGGAACAAGAGCCTCAGGAGGAGGGAAGCCATTACACTGGACATCATGCCTGAAGATAGC CGAAGACTTAGCAACAGGAATCCTCTACATCCATCAGAATCCAGGATCACTAACCCACGGAAATCTGAAATCCTCAAACGTCCTACTCGGTCCCGATTTC GAATCATGCCTGACCGATTTCGGTCTGGCAGGATTCCAAAACCCTGACTCCCCCAATGAGCCCAGCGCGGTAGCCTTGTTCTACCGCGCACCGGAAGTCA GGGACGTACGGAAACCCCCGACCCAGCCTGCTGACGTGTACAGCTTTGGAGTGCTCCTACTAGAGCTCCTGACGGGGAAAACCCCGTTTCAGGACTTGGT TCAGGAGCACGGGTCGGATATACCCAGATGGGTCCGGTCGGTTCGGGAGGAGGAAACTGATTCAGGGGACGACCCGGTTTCTTCGGGTAACGAAGCTGAG GAGAAGCTGCAGGCTTTGGTTGGGGTGGCAATGCTGTGCGTTGTGAGGCAGCCGGAGAATCGGCCGGCGATGAGGGAGGTGGTGAAGATGATTAGGGACG CGAGGTCGTCGGAGAGTGGTGGCGGAGGTGGACAGGTGTCGTCGAATTCGAATAATAGTAGTGATCATTCGCCTGGAAGGTGGTCGGATACGGTTCAGAG CTTGCCCAGAGAAGAGCATTTGAACATTTGA
AA sequence Show only first row Show all	>Lus10013073 pacid=23149854 polypeptide=Lus10013073 locus=Lus10013073.g ID=Lus10013073.BGIv1.0 annot-version=v1.0 MEPLVSIRPLFFFFILLIAISPVRSTDSEALLALKSTIDRSNSLPTWQPSAAANVCNWEGVKQCLNGRVTKLVIEIRNLTGELDSKILNRLDQLRVLSFK SNSISGKIPDLSGLVNLKSLFLSQNNFSGGFPESVTKLHRLKVVVLSGNQLSGPIPNSLLGLDRLYVLYLEENQFTGSVPPLGQTSLRYFNVSGNRLSGS IPVTSALVRFNSSSFSGNAELCGEQIGKRCSDFSPSPSPGSLSSSKNHRRRSKLIKIIALAAAGLVVLILVTAAILVCLCRRRGKSSATSTRSVPKGGGD GEVGSLESGGGGGGGGGSGASGNNGGRQGGFSWERGEGIGTLVFLGAGDQIMSYSLEDLLKASAETLGRGTMGSTYKAVMESGFIVTVKRLKDARYPRVE EFRRQMEVIGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLLHGTRASGGGKPLHWTSCLKIAEDLATGILYIHQNPGSLTHGNLKSSNVLLGPDF ESCLTDFGLAGFQNPDSPNEPSAVALFYRAPEVRDVRKPPTQPADVYSFGVLLLELLTGKTPFQDLVQEHGSDIPRWVRSVREEETDSGDDPVSSGNEAE EKLQALVGVAMLCVVRQPENRPAMREVVKMIRDARSSESGGGGGQVSSNSNNSSDHSPGRWSDTVQSLPREEHLNI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10850			Leucine-rich repeat protein ki...		Lus10013073 [exp]	0	1
AT3G25570			Adenosylmethionine decarboxyla...		Lus10040973 [exp]	1.4	0.8869
AT1G10850			Leucine-rich repeat protein ki...		Lus10029075 [exp]	2.0	0.9073
AT3G19300			Protein kinase superfamily pro...		Lus10019844 [exp]	4.5	0.8790
AT2G36660		PAB7	poly(A) binding protein 7 (.1)		Lus10023885 [exp]	6.2	0.7774
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10005784 [exp]	6.9	0.8378
AT4G02100			Heat shock protein DnaJ with t...		Lus10036335 [exp]	6.9	0.8795
AT2G40230			HXXXD-type acyl-transferase fa...		Lus10028983 [exp]	8.4	0.8354
AT5G41140			Myosin heavy chain-related pro...		Lus10024517 [exp]	9.8	0.8277
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10042325 [exp]	10.0	0.8608
AT4G02100			Heat shock protein DnaJ with t...		Lus10010272 [exp]	11.0	0.8387

Compare expression of checked genes

Lus10013073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.