Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27670 213 / 2e-60 RST1 RESURRECTION1, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022263 [exp] 358 / 5e-111 AT3G27670 1258 / 0.0 RESURRECTION1, ARM repeat superfamily protein (.1) Lus10010375 [exp] 268 / 9e-85 AT3G27670 332 / 6e-101 RESURRECTION1, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G346000 [exp] 219 / 2e-62 AT3G27670 1757 / 0.0 RESURRECTION1, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12530 [flax] [poplar] DUF3730 Protein of unknown function (DUF3730)
Representative CDS sequence Show only first row Show all	>Lus10013074 pacid=23149290 polypeptide=Lus10013074 locus=Lus10013074.g ID=Lus10013074.BGIv1.0 annot-version=v1.0 ATGGACGCTTATGCTCCACTTCTGGAGAAAACGAAGGTTCCGCAGCCGTCTTTACAGAAACTCGCTGTGGTTTCTATCTTCTCGAAGCTCCGCACAGCTC CTAAGTACCTTGACGCTGACTCCGAACCTGGCAGAGAAGCAATCTCTAACTGCCTACTGTCCCCATCCCCTGCAGTTGTCGACCAGGCGGATCGTGAGCT CTGCCGTCTCGTTTCCGATTCCACATTGCATCTCTCTCGTGGTATTGTTGAGCTCCAGTCAGCTCTTGAAGGAACAGAGGACAAGTTCGTTACCTTGTTT GTTAAAGGCCTTGGGTTTCTAGTTAGGCTGGGCTTTGACAGGAGCCATGTCTTCTGGCGGTTTACTTCTTCCGAAAATCATCCTTTTGTTAAGATGTTGC TGTGTAGAAGCCAGGTTCAATCTGAATTGGTGCAGCAAGTTTTAATGTTCATGGCAAAGGATAGGGGGTTGGGGATGGTTGATGCTTGTGAATTCTTGAG ACCCGTGCTAAACTTTTCAGTACTAGGCGCAAATTCAGTATCAAAACCTGCTCTAAGTGAAGAACTCCTTTTCATGTTTCCTGTGCTTAACCTTATGTCA TCCTCTTCCAAATCAGTTAAGGCTGCAGCAACTGATTTAATCGGCGTGGTTGAGAATTGTGTAGTTCAATTATTGAAAGCATTAAATCCTGAGCTGTGTG TTGGTTTGAAATTTCCTCATAAGAGCACAGTGGGGACCATCGTGTATAGGCTTTTGCAACATTTGTGGGTACAGCCACAAATATTAGCCATGCTTCCGTC ACTTGCTGCACACAACATAATGGTTCCACTCATAATTCAAATTATTATGCCAATGCTTCGGACAGAGGGGAAACAAGTGTTGTATGACACAGGCACCCGC TTGCTTTATCAGACCTGGGCAATGAATGATCGAGCTTTTGTAAGCTTGCAGGCAGCACTTCTTCCAAACGGGTTTTCACAATTCAAGTCGGAGAGAACTA CCTGTATAAGTTTAGCTGCTTCCGTCAGGGATGTTACTGAAATGACTGCAATTTGTATTGTTCTTATGTTAAAAAAACTTAGCTTCTTCTTCTTCCGTAT TCCCAACCAGGCTTGCATCGAGAGCCGAGACCCAATCATTCAAGCTCTAGGTTTTCAAGGCCTGGCACATCTTTGTGAAGCTGATGTTGTTGAATTCTAT ATAGCCTGGGATGTCATCGCCAAGGATGTTCTAAACTATTCCATAAATCTTGTTCTAGCACAAAGGCTCAATATATACAATAGGCCTCCTACTGATTAG
AA sequence Show only first row Show all	>Lus10013074 pacid=23149290 polypeptide=Lus10013074 locus=Lus10013074.g ID=Lus10013074.BGIv1.0 annot-version=v1.0 MDAYAPLLEKTKVPQPSLQKLAVVSIFSKLRTAPKYLDADSEPGREAISNCLLSPSPAVVDQADRELCRLVSDSTLHLSRGIVELQSALEGTEDKFVTLF VKGLGFLVRLGFDRSHVFWRFTSSENHPFVKMLLCRSQVQSELVQQVLMFMAKDRGLGMVDACEFLRPVLNFSVLGANSVSKPALSEELLFMFPVLNLMS SSSKSVKAAATDLIGVVENCVVQLLKALNPELCVGLKFPHKSTVGTIVYRLLQHLWVQPQILAMLPSLAAHNIMVPLIIQIIMPMLRTEGKQVLYDTGTR LLYQTWAMNDRAFVSLQAALLPNGFSQFKSERTTCISLAASVRDVTEMTAICIVLMLKKLSFFFFRIPNQACIESRDPIIQALGFQGLAHLCEADVVEFY IAWDVIAKDVLNYSINLVLAQRLNIYNRPPTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013074 [exp]	0	1
AT1G74600		OTP87	organelle transcript processin...		Lus10002054 [exp]	2.0	0.8889
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Lus10025172 [exp]	6.3	0.8293
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10018994 [exp]	6.5	0.8692
AT1G15240			Phox-associated domain;Phox-li...		Lus10035877 [exp]	8.9	0.8175
					Lus10007227 [exp]	10.7	0.7612
AT5G36930			Disease resistance protein (TI...		Lus10005373 [exp]	12.2	0.7517
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10034126 [exp]	14.3	0.8167
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10013870 [exp]	18.7	0.8080
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10033845 [exp]	19.8	0.8509
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10016975 [exp]	20.2	0.7375

Compare expression of checked genes

Lus10013074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.