Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27670 228 / 1e-67 RST1 RESURRECTION1, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022263 [exp] 501 / 1e-165 AT3G27670 1258 / 0.0 RESURRECTION1, ARM repeat superfamily protein (.1) Lus10010376 [exp] 473 / 1e-162 AT3G27670 687 / 0.0 RESURRECTION1, ARM repeat superfamily protein (.1) Lus10010374 [exp] 243 / 2e-79 AT3G27670 183 / 2e-51 RESURRECTION1, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G346000 [exp] 320 / 5e-100 AT3G27670 1757 / 0.0 RESURRECTION1, ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013075 pacid=23149281 polypeptide=Lus10013075 locus=Lus10013075.g ID=Lus10013075.BGIv1.0 annot-version=v1.0 ATGTCGTTTACATCTAAAGAACTGACCAAGCGAGTGCCGCATAATGTAACAGTGGATATCCATGCAAAGTACGAGACTGAACTAGCTGAAATTTCTGCAT CTCTTCAGCTCTCAAGAAACATTTTTGCTGCACTTCTTTCCCTTGAATCATGGAAATCCTTCATGTATCATTGGATGAATGCTAATGTTTCCTCTCTTGA CGCTAAAGCATCATCTGTTGGAGTAGACAAAAAATGTAAAGCTGCAAACTTGAAGAGTGTTATGCAATTAGCAGAAGAATCTTTGCTGAGAGCTGCTGAG AACATGGCACTTGCTATTGGTGCACTTTGTGCGGTATTGCATGCATCTGCCCATACTATAAAATCAGCTGCATCAAAATTTCTGTTGAGTTGGTTATTCC AGCATGAGCATCAACATCGGCAATGGTCAGCTACAATGTCCCTTGGGCTGATCTCAACTGGCCTGCATGTAACTGATCATAAGCAGAAATTTGAAAACAT CAAAGAACTTCTTGAGGTACTGTGCACGAGCAGAAATACTCTTGTCAAAGGAGCTTGTGGTGTTAGCTTGGGCTTTTCATGTGAAGATCTCTTGACCAGG GGTGATTACTTTGTTAACAAAGAGAAAGAGCACTATAGACAGCACGAGGTCAACTTAATTTCCAGAATTATTAGTGCGTTACTTCTTATGACAAGCCAGC TCAGTGAAGCTTCAAATGATTTTATGGAAGGCTTGTCTGCATATCCCCCACTTTGCAAGAGCAATTCCAAACTAAATGTAAGTTCTAAGTTTTTGGTCAA AGAGTCGGATGAGCTCATGGAGGATGCATGA
AA sequence Show only first row Show all	>Lus10013075 pacid=23149281 polypeptide=Lus10013075 locus=Lus10013075.g ID=Lus10013075.BGIv1.0 annot-version=v1.0 MSFTSKELTKRVPHNVTVDIHAKYETELAEISASLQLSRNIFAALLSLESWKSFMYHWMNANVSSLDAKASSVGVDKKCKAANLKSVMQLAEESLLRAAE NMALAIGALCAVLHASAHTIKSAASKFLLSWLFQHEHQHRQWSATMSLGLISTGLHVTDHKQKFENIKELLEVLCTSRNTLVKGACGVSLGFSCEDLLTR GDYFVNKEKEHYRQHEVNLISRIISALLLMTSQLSEASNDFMEGLSAYPPLCKSNSKLNVSSKFLVKESDELMEDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013075 [exp]	0	1
AT1G48650			DEA(D/H)-box RNA helicase fami...		Lus10009643 [exp]	2.0	0.8085
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Lus10010088 [exp]	3.5	0.8171
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10030161 [exp]	4.9	0.7811
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Lus10013086 [exp]	7.1	0.8018
					Lus10022247 [exp]	7.5	0.6877
AT1G22275		ZYP1b	Myosin heavy chain-related pro...		Lus10010242 [exp]	10.7	0.7237
AT4G28450			nucleotide binding;protein bin...		Lus10015673 [exp]	11.6	0.7158
AT2G34730			myosin heavy chain-related (.1...		Lus10038540 [exp]	11.8	0.7553
AT2G47830			Cation efflux family protein (...		Lus10040922 [exp]	14.9	0.7254
AT1G11070			unknown protein		Lus10038307 [exp]	18.3	0.7678

Compare expression of checked genes

Lus10013075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.