Plant FIBer expression Database

Lus10013076 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G27670 452 / 2e-140 RST1 RESURRECTION1, ARM repeat superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022263
[exp]
1077 / 0 AT3G27670 1258 / 0.0 RESURRECTION1, ARM repeat superfamily protein (.1)
Lus10010376
[exp]
873 / 0 AT3G27670 687 / 0.0 RESURRECTION1, ARM repeat superfamily protein (.1)
Lus10010374
[exp]
216 / 4e-64 AT3G27670 183 / 2e-51 RESURRECTION1, ARM repeat superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G346000
[exp]
672 / 0 AT3G27670 1757 / 0.0 RESURRECTION1, ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10013076 pacid=23149287 polypeptide=Lus10013076 locus=Lus10013076.g ID=Lus10013076.BGIv1.0 annot-version=v1.0
ATGTACTGGGCTGGGGCATATGATGCTGTACAAAAGGTGAAAGACCTTCTTCTTTCTTGGATCCTACACATAGATGTTTCACCGTTAAACCCTAGTTTCC
TTAAGGAAGACCAAGAGAAGGTCTTATCAGTAGGATCCTGTCTTGTTCTTCCTAATATTGTAGCTTTCTGCCTGAAAGTAGAAATGATGAATGGTGTTGA
GCTAGATCATTTACTTTATGGATATGAAAAGCTTATTAAGGAACTCTTAGGCATGAAGAAATTTGGTACTTCCCATCAAAGTTTATTGGCAGCCTCGTGT
ATAGGAGGAGGAAGCCTTCTTACCTGCATTCTGAAGGAAGGCGTACAACCCATTGACACAGAATATGTGAAACGCCTGCTTGAATTATTTAGAAGTTGTT
ATACTAATACTTATCCATCTATGGTTAATCTTGGAGGGATGTTTGGAATAGTCAATGCCATGGGAGGAGCAGTTGGGGTTTTGGTTCATGACTTTGACTT
TTCTTCTCAAACGAGAAGTGTTCATGAACAGGATTCTTCAAGTCTTTTAGGTCCTCTGGTTTCAAGTCCAGCTTGTGAACCAAATGTGACTTCATTGGTG
CAAGAAAGATTTCTTGTTGCGCAGAACTCAAATGATCTTATGATGAAACAGACTACAACTTGGGCATTGTCCTTCCTGAGAAATCATTTATGGTCACATG
AAGCGAAAAATACTGATTCTACTGGTCAGGTTGATATTGTCGACTCCAGAATAATTTCTCATAGCTTTCCCGATGACAGTTCAGTGGTGAAGCTATCGAT
GTGGCTTTTGAATTTGAACTATGCCGAGGCTGGGAATGTAACGTTTGTTACAAATGCAGCCACTGTCCTGAGATGCCTATCACGAGCTCCACGGCTACGA
GCTGTAAATTGGGGTAGCATCATTAGACGCTGCATGAGATATGAGGCTGAAGGTTACAAATCTCTGCCCTCAGATTCAGATATTAATAGGGCAACACTTA
GAGAGGAATGCCTAAAATTTTCCATATCTCATGCAAACAAATTTGATCAACTCCTTACTTTTCTTGATGAACTATCTCTCCTATCTAGGTTGAGGACACT
GAAACTGAGTTTGCAATCATGCCTCCTTATTCAGCTGGCTGGCCTGATTAAGGTTTTCTCAGGCTCTCGGCTACTTACCTTATTTGATGATATGATGGAA
TTCTTTTCTTCAGATTCTTCATACAACATGTGCAGCCTGGATCAGAAAAGTTTTTTGTGGGTATCATGTTGGATAGGTATATGTGACTGTTTAGATGAAG
CTTCCCTCGACTCTCTGCAGTGCATATCTAGTATAGAACAGTGCATGGAGATTCTGTTTACTCTGCTGCCTCGGCCAGAATTCGCTGAGAGTAGTAGTGA
CTTGCCTAATTCCTTACAAGAATGGACTGAAGTTGTTAAAAATGTTTTGCGAAGGCTCGTGGGGTTTGGCTATGAAACTTCCTCCAGGCAAGTTCCCTTG
GTGAATCTAGTCGAAGGGGAAGGCCAGTACTCCGGAGTCCTAAAGAAGATTCTAGCAAAAGCAAAGCTTGCCAGAATGAGTTCTTTGCCTTTAACCGAGC
TAGGAAAACTGAAAACTTATTTATTGAACTCCAACTCAAATGAGATTATAGCAGCTTTGGAACGCGGAGAGGGGAGTGTAAAGAGGCAGTGGCTGATTGA
TTCGGTGGAAACAAGTTGCGTATCAACCCATCCATCGACGGCACTGAGATTTGTGGGTCTTGTATCTGGTATCTGCTGCAAATACATGCCTCTGTTAACC
TTTGACATGTTAACGGTTCTAAGTGATCTACTAGTGACTCTGGCCGCTCTCCTGAAGGAGCCCAGTTGGGAATCTATTGCCATATCGGTTACTTGCAGTC
TATGTGCGTCAACAGAACGAATGTATGAGTGGATTACATCAGGATACAACAGGTCCAACACTCAGCCTATTGACGAAAGTGAGAAGGAAAACGGTGCCTT
GTTATTGTGTACAATCCATTACACCTGTGTATGTTTGAAAGAGTACTTGCCGCTAGAGAAGCAGCGTCTGCTTGCCAACATGATTATCAAGAATTAA
AA sequence
>Lus10013076 pacid=23149287 polypeptide=Lus10013076 locus=Lus10013076.g ID=Lus10013076.BGIv1.0 annot-version=v1.0
MYWAGAYDAVQKVKDLLLSWILHIDVSPLNPSFLKEDQEKVLSVGSCLVLPNIVAFCLKVEMMNGVELDHLLYGYEKLIKELLGMKKFGTSHQSLLAASC
IGGGSLLTCILKEGVQPIDTEYVKRLLELFRSCYTNTYPSMVNLGGMFGIVNAMGGAVGVLVHDFDFSSQTRSVHEQDSSSLLGPLVSSPACEPNVTSLV
QERFLVAQNSNDLMMKQTTTWALSFLRNHLWSHEAKNTDSTGQVDIVDSRIISHSFPDDSSVVKLSMWLLNLNYAEAGNVTFVTNAATVLRCLSRAPRLR
AVNWGSIIRRCMRYEAEGYKSLPSDSDINRATLREECLKFSISHANKFDQLLTFLDELSLLSRLRTLKLSLQSCLLIQLAGLIKVFSGSRLLTLFDDMME
FFSSDSSYNMCSLDQKSFLWVSCWIGICDCLDEASLDSLQCISSIEQCMEILFTLLPRPEFAESSSDLPNSLQEWTEVVKNVLRRLVGFGYETSSRQVPL
VNLVEGEGQYSGVLKKILAKAKLARMSSLPLTELGKLKTYLLNSNSNEIIAALERGEGSVKRQWLIDSVETSCVSTHPSTALRFVGLVSGICCKYMPLLT
FDMLTVLSDLLVTLAALLKEPSWESIAISVTCSLCASTERMYEWITSGYNRSNTQPIDESEKENGALLLCTIHYTCVCLKEYLPLEKQRLLANMIIKN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G27670 RST1 RESURRECTION1, ARM repeat supe... Lus10013076
[exp]
0 1
AT3G54860 ATVPS33 VACUOLAR PROTEIN SORTING 33, S... Lus10007300
[exp]
1.4 0.8377
AT4G03090 sequence-specific DNA binding;... Lus10024746
[exp]
1.7 0.8651
Lus10042808
[exp]
3.5 0.8068
AT5G53130 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNE... Lus10038308
[exp]
3.6 0.7754
AT4G19150 Ankyrin repeat family protein ... Lus10001414
[exp]
4.5 0.8067
AT5G53080 Tetratricopeptide repeat (TPR)... Lus10005905
[exp]
4.9 0.8066
AT4G32790 Exostosin family protein (.1) Lus10043238
[exp]
5.5 0.8353
AT5G66030 ATGRIP, GRIP Golgi-localized GRIP domain-co... Lus10010676
[exp]
5.7 0.8029
AT4G29170 ATMND1 Mnd1 family protein (.1.2) Lus10002503
[exp]
5.9 0.8050
AT3G26115 Pyridoxal-5'-phosphate-depende... Lus10036952
[exp]
10.1 0.7290

Lus10013076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.