Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40400 551 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 218 / 9e-62 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 215 / 2e-60 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G01110 214 / 3e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 216 / 9e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09820 204 / 2e-57 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G26680 199 / 1e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G09680 197 / 6e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02150 197 / 4e-54 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74580 188 / 6e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022262 [exp] 481 / 3e-168 AT5G40400 248 / 6e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022182 [exp] 310 / 4e-103 AT5G40400 155 / 9e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012037 [exp] 236 / 8e-69 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 216 / 7e-61 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 216 / 8e-61 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008185 [exp] 214 / 3e-59 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 214 / 5e-59 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10037968 [exp] 202 / 5e-55 AT5G55840 1131 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034421 [exp] 198 / 1e-54 AT2G02150 706 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G071600 [exp] 746 / 0 AT5G40400 634 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 226 / 1e-64 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G147700 [exp] 221 / 2e-63 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G098400 [exp] 215 / 2e-60 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 214 / 2e-60 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G166001 [exp] 207 / 3e-59 AT4G26680 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G014500 [exp] 211 / 6e-59 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.017G131400 [exp] 202 / 9e-57 AT1G09680 669 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G035700 [exp] 199 / 5e-55 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.016G025600 [exp] 193 / 3e-53 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10013077 pacid=23149306 polypeptide=Lus10013077 locus=Lus10013077.g ID=Lus10013077.BGIv1.0 annot-version=v1.0 ATGAAGAGAGTTTCAATCAGAAAGGCTGCAACTTTTGCGTCTGATGGACCTCCCACCTTTCCCCCAAAATCTTCCTTCTCTTCTTCTTCTTCGCTGCAAC TTGTTCCAGAGCAGCCAACACCGAAACCCCTGTCGAACCCATTCTACAGTTTCCTTCCTCAAAGTCGAAACCCCAACAACATTGTAAATCTCATCTCCTC ATCCCTGAAACAACAACAACCGGCTGATCTCTCTCTTCTCCGTGACGAGATGAACGACCTTCTTCCCCATCTGGGTTCCACTGAAATCTCTAGGGTTTTG CTTCGTTGCCAGTCTGATTCAGTTTCAGCTTTAGCTTTCTTCAATTGGGTGAAGAATGATCTCGGTCACATACCCACCACCCACAATTACTGCCTCATCG TTCATATCTTGGCTTGGTCCAAGGAATTCAAGCCAGCCATGAAATTGTTGACTGAGCTGATTCAGTTTGTTAATGATGATGATGATGATGATTCTTCATC CGTGTTCCAGAGTTTGCTCCTTCATTCTCAAGATTGCAATTCGGACCCTGTTGTTTTCGACATGCTCATCAAGGCTCATGTCAAAGTCGGAAGAGTCAAA GAAGGGTTCATCACTTTTATGAAGGTTATGGATTTTGTTGGCTATGTTCCTACAGTGAGCTCCTGTAATTGTCTTCTGAACGGTCTGCTGAAATCGAATT TCACTGCTCAATGTTGGCAAGTTTACGACGAAATGGTAAGACTTGGTATACACCCGAATTCATTCACCTTTAATATTTTAACTCATGCCTTCTGCAAAGA TGGAGATAATGTCAGTAAAGTGAATGAATTCCTTGAAAAAATGGAGGAAGAAGGCTTCGAGCCCGATATCGTCACGTATAACACACTGATTAGTAGCTAT TGTAGGAAGGGAAGATTGGCTGACGCTTATTACTTGTACAAGATCATGTATCGACGGGGTGTGTTACCCGATTTGGTCTCTTATACTGCATTGATCAACG GTCTTTGTAAAGAAGGCAAGATGAAAGATGCTGTCCAGTTCTTCCACAGAATGGTTCACAGAGGTTTGAATCCGGACGTGGTGGCGTACAACACTTTAAT CTGTGGCTACTGCAAAAAAGGAAGGATTCAGGAGGCTAAGTCATTGCTGTATCAGATGATAGGTAACGGGATCCGTGCCAATAGTTTCACTTGTCGAGTT TTGATTCGAGCCTACGTGGAAGACGGCAGGTTGATTTCGGCTCTGAATTTGGCAGTGGAGCTTGAGAGATTTGGTGCATCGATTTCTTGCGATGTTTATG ATTATCTAATAGTTCGCCTGTGTGAAGAGGATAAGCCGTTTGCAGCGAAGAGTCTATTAGAAAGGAAGTGTAAGGTTGGTTATAAACCAGATATGCTAAT CTACGAAAAACTCGTCGAGTCTCTGAGCATGGTCAACAGTATAGCTGATGCATTGCTTCTCAAGTCTGAGATGATTTGTAGTAGGAATGGGAAACCCCTC AGTGTTGCGGCATACAAAGCTCTGATTGCCGGTTTGTGTAGAGCGGGCAGAAGTGCCGAAGCGGAATCTTTGATGGATGAGATGATTAAATTAGGTGTCG TTCCGGATCGAGAAGTATGCCGGGCATTGATATCCGGGTACTGCAAAGGAAGAGCTGCTGGGAAAGCTGAGTCATTGCTGGAATCATTTGCCAGGGAGTT TGGCATATTGGACAATGAGAGTTACAATGAAGTTGCGAGAGTCATATGCGAAGATGGTGATGCTGGTAAGTTGATGGATCTGCAGGATAGGATGTTGAAA GTTGGGTACGCACCCAGTAGCATGACTTTCAATTACACAATCAAGGCTCTTTGGAGAACCGTGGGACTCAAACAAACAGAATAA
AA sequence Show only first row Show all	>Lus10013077 pacid=23149306 polypeptide=Lus10013077 locus=Lus10013077.g ID=Lus10013077.BGIv1.0 annot-version=v1.0 MKRVSIRKAATFASDGPPTFPPKSSFSSSSSLQLVPEQPTPKPLSNPFYSFLPQSRNPNNIVNLISSSLKQQQPADLSLLRDEMNDLLPHLGSTEISRVL LRCQSDSVSALAFFNWVKNDLGHIPTTHNYCLIVHILAWSKEFKPAMKLLTELIQFVNDDDDDDSSSVFQSLLLHSQDCNSDPVVFDMLIKAHVKVGRVK EGFITFMKVMDFVGYVPTVSSCNCLLNGLLKSNFTAQCWQVYDEMVRLGIHPNSFTFNILTHAFCKDGDNVSKVNEFLEKMEEEGFEPDIVTYNTLISSY CRKGRLADAYYLYKIMYRRGVLPDLVSYTALINGLCKEGKMKDAVQFFHRMVHRGLNPDVVAYNTLICGYCKKGRIQEAKSLLYQMIGNGIRANSFTCRV LIRAYVEDGRLISALNLAVELERFGASISCDVYDYLIVRLCEEDKPFAAKSLLERKCKVGYKPDMLIYEKLVESLSMVNSIADALLLKSEMICSRNGKPL SVAAYKALIAGLCRAGRSAEAESLMDEMIKLGVVPDREVCRALISGYCKGRAAGKAESLLESFAREFGILDNESYNEVARVICEDGDAGKLMDLQDRMLK VGYAPSSMTFNYTIKALWRTVGLKQTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40400			Pentatricopeptide repeat (PPR)...		Lus10013077 [exp]	0	1
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031292 [exp]	9.9	0.7057
AT5G66820			unknown protein		Lus10002968 [exp]	10.1	0.7216
AT4G37170			Pentatricopeptide repeat (PPR)...		Lus10036921 [exp]	13.0	0.6301
AT1G26580			unknown protein		Lus10037097 [exp]	18.0	0.6603
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Lus10016911 [exp]	20.6	0.6763
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10024723 [exp]	33.0	0.6396
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10025650 [exp]	33.9	0.6847
AT3G60680			Plant protein of unknown funct...		Lus10009284 [exp]	37.3	0.6177
AT3G53230			ATPase, AAA-type, CDC48 protei...		Lus10001402 [exp]	39.1	0.5520
AT1G68030			RING/FYVE/PHD zinc finger supe...		Lus10012209 [exp]	46.8	0.6551

Compare expression of checked genes

Lus10013077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.