Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27850 116 / 8e-33 RPL12-C ribosomal protein L12-C (.1) AT3G27830 115 / 2e-32 RPL12-A ribosomal protein L12-A (.1) AT3G27840 100 / 9e-27 RPL12-B ribosomal protein L12-B (.1) AT3G06040 51 / 4e-08 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2.3) AT4G37660 45 / 4e-06 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) AT1G70190 44 / 2e-05 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (.1.2) AT4G36420 42 / 4e-05 Ribosomal protein L12 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022261 [exp] 196 / 3e-64 AT3G27850 178 / 4e-57 ribosomal protein L12-C (.1) Lus10031180 [exp] 54 / 9e-09 AT3G06040 202 / 2e-66 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2.3) Lus10031756 [exp] 53 / 1e-08 AT3G06040 202 / 2e-66 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2.3) Lus10023839 [exp] 47 / 1e-06 AT4G37660 155 / 1e-48 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) Lus10000093 [exp] 47 / 1e-06 AT4G37660 155 / 1e-48 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) Lus10028336 [exp] 47 / 1e-06 AT4G36420 176 / 1e-56 Ribosomal protein L12 family protein (.1) Lus10041783 [exp] 47 / 1e-06 AT4G36420 174 / 5e-56 Ribosomal protein L12 family protein (.1) Lus10021011 [exp] 47 / 1e-06 AT4G37660 157 / 3e-49 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) Lus10036228 [exp] 43 / 4e-05 AT1G70190 238 / 3e-80 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G346100 [exp] 129 / 5e-38 AT3G27830 146 / 1e-44 ribosomal protein L12-A (.1) Potri.015G077200 [exp] 53 / 8e-09 AT3G06040 132 / 3e-39 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2.3) Potri.007G019100 [exp] 49 / 2e-07 AT4G36420 127 / 2e-37 Ribosomal protein L12 family protein (.1) Potri.004G224300 [exp] 46 / 2e-06 AT4G37660 154 / 4e-48 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) Potri.003G074800 [exp] 42 / 8e-05 AT1G70190 204 / 1e-66 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00542 [flax] [poplar] Ribosomal_L12 Ribosomal protein L7/L12 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10013078 pacid=23149314 polypeptide=Lus10013078 locus=Lus10013078.g ID=Lus10013078.BGIv1.0 annot-version=v1.0 ATGGCGTCCACTGCAGCATCTCTGTCCATCTCCGCCACCCTCTACTGTTCTCCATCCTCTTACTCGACAGCCACTGCGAAACTTCCCGTCCTCGAATTGC CCCTCCGCCCCACCTCCTTCCCTTCCCTCTCCACTCGCCGCTCCGCTTCTCGCCTCCGTCCGGTTCACGCCGTCGCCGCTCCCGAGAAAATCGAGAAGCT CGGCGCCGACATCTCCTCACTGACTCTGGAAGAGGCTCGCACTCTCGTGGATTACCTGCAGGAGAAGCTCGGAGTCTCCGCGGCCGCTTTCGCCCCCGCC GCAGTGGCAGCCGCTCCCGGAGCGGGTGGAGAAGCCGTCGCGGAGGCAGTGGTGGAGAAGACGGAATTCGATGTGTCAATAGAGGAGGTGCCGAGCAACG TTAGAATTGCAGTGATCAAGGCGGTAAGGGCGTTGACAAACTTGGGGTTGAAGGAGGCAAAGGAGCTGATTGAAGGGCTGCCGAAGAAGTTGAAGGAAGC AGTCTCTAAAGAAGAAGCTGAGGAAGCTAAGAAGCAGCTGGAAGCAGCCGGTGCTAAGGTTTCAGTTGTATGA
AA sequence Show only first row Show all	>Lus10013078 pacid=23149314 polypeptide=Lus10013078 locus=Lus10013078.g ID=Lus10013078.BGIv1.0 annot-version=v1.0 MASTAASLSISATLYCSPSSYSTATAKLPVLELPLRPTSFPSLSTRRSASRLRPVHAVAAPEKIEKLGADISSLTLEEARTLVDYLQEKLGVSAAAFAPA AVAAAPGAGGEAVAEAVVEKTEFDVSIEEVPSNVRIAVIKAVRALTNLGLKEAKELIEGLPKKLKEAVSKEEAEEAKKQLEAAGAKVSVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27830		RPL12-A	ribosomal protein L12-A (.1)		Lus10013078 [exp]	0	1
AT1G19740			ATP-dependent protease La (LON...		Lus10006131 [exp]	1.0	0.9442
AT3G27850		RPL12-C	ribosomal protein L12-C (.1)		Lus10022261 [exp]	3.9	0.9290
AT3G09580			FAD/NAD(P)-binding oxidoreduct...		Lus10035530 [exp]	4.2	0.9211
AT4G25910		ATCNFU3, NFU3	NFU domain protein 3 (.1)		Lus10001634 [exp]	4.5	0.9327
AT1G17100			SOUL heme-binding family prote...		Lus10012559 [exp]	6.9	0.9194
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10019493 [exp]	7.2	0.9254
AT4G14870		SECE1	secE/sec61-gamma protein trans...		Lus10010555 [exp]	7.5	0.8972
AT1G16080			unknown protein		Lus10024094 [exp]	7.9	0.9166
AT3G27750		EMB3123	EMBRYO DEFECTIVE 3123, unknown...		Lus10038297 [exp]	8.8	0.8977
AT5G52960			unknown protein		Lus10027566 [exp]	9.2	0.9092

Compare expression of checked genes

Lus10013078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.