Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27820 665 / 0 ATMDAR4 monodehydroascorbate reductase 4 (.1) AT3G52880 414 / 3e-141 ATMDAR1 monodehydroascorbate reductase 1 (.1.2) AT5G03630 401 / 6e-136 ATMDAR2 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) AT3G09940 376 / 4e-126 MDAR2, ATMDAR3, MDHAR MONODEHYDROASCORBATE REDUCTASE 2, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, monodehydroascorbate reductase (.1.2) AT1G63940 328 / 9e-107 MDAR6 monodehydroascorbate reductase 6 (.1.2.3.4) AT3G17240 49 / 8e-06 mtLPD2, LPD2 lipoamide dehydrogenase 2 (.1.2.3) AT1G48030 47 / 4e-05 mtLPD1 mitochondrial lipoamide dehydrogenase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022260 [exp] 875 / 0 AT3G27820 719 / 0.0 monodehydroascorbate reductase 4 (.1) Lus10035593 [exp] 409 / 6e-139 AT3G52880 668 / 0.0 monodehydroascorbate reductase 1 (.1.2) Lus10028763 [exp] 319 / 7e-103 AT1G63940 755 / 0.0 monodehydroascorbate reductase 6 (.1.2.3.4) Lus10008633 [exp] 311 / 2e-101 AT3G52880 493 / 3e-174 monodehydroascorbate reductase 1 (.1.2) Lus10000758 [exp] 45 / 0.0002 AT3G24170 776 / 0.0 glutathione-disulfide reductase (.1.2.3) Lus10017102 [exp] 45 / 0.0002 AT1G48030 918 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10011734 [exp] 44 / 0.0002 AT3G24170 863 / 0.0 glutathione-disulfide reductase (.1.2.3) Lus10037825 [exp] 44 / 0.0002 AT1G48030 922 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10043103 [exp] 43 / 0.0005 AT1G48030 889 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G346200 [exp] 726 / 0 AT3G27820 723 / 0.0 monodehydroascorbate reductase 4 (.1) Potri.006G114800 [exp] 441 / 2e-151 AT3G52880 708 / 0.0 monodehydroascorbate reductase 1 (.1.2) Potri.001G099600 [exp] 318 / 2e-102 AT1G63940 793 / 0.0 monodehydroascorbate reductase 6 (.1.2.3.4) Potri.010G151400 [exp] 44 / 0.0002 AT3G17240 817 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.003G178200 [exp] 44 / 0.0002 AT3G24170 848 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.008G100800 [exp] 44 / 0.0003 AT3G17240 868 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.015G037800 [exp] 42 / 0.0008 AT3G54660 872 / 0.0 glutathione reductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10013079 pacid=23149284 polypeptide=Lus10013079 locus=Lus10013079.g ID=Lus10013079.BGIv1.0 annot-version=v1.0 ATGGGACGAGCATTTGTTTACGTGATTCTGGGAGGAGGGGTGGCAGCTGGATACGCAGCACTTGAATTTACAAGGAAAGGCGTTGCTCCTGGCGAACTCT GCATCATCTCTGAAGAACCTGTTGCACCTTATGAAAGACCAGCTCTCAGTAAAGGTTATTTACTACCAGAAGCTCCATCAAGGCTTCCATCTTTCCACAC CTGTGTTGGAGCTAATGAGGAGAAATTATCTCCAAAATGGTATAAAGAACATGGGATTGAGTTAGTCCTCGGGACTCGAGTTATATCTGCTGATATGAGG CGCAAAACATTGCTTACTGCTACAGGAGAGACTATAAGTTTCAAGATTCTAATTATTGCCACAGGTGCTCGGGTATTGAAACTGATCTCCACTGGGTTGA AGTTGACTGATAGATCTAAGTTGACATTCATTCACATTGGTGGATGGGTTAAAGACCAGAGTGCAAGAAATTCAACAAGCCAAGACATATTCATTTCGAT GAATGAAACTCTTGTTAATAATATGGCTCTGAAGCTAGAGGAATTTGGTGTGACCGCATCGGATGCTCAAAATGTGTGTTATTTACGAGATATAGCAGAT GCAAATAGGCTTGTTGATGTTGTGGGATCACGAGCTGGTGAGAATGCTGTTGTCATCGGTGGTGGCTACATAGGAATGGAATGTGCAGCATCTTTAGTGA TCAATAAGATGAACGTGGCTATGGTTTTCCCAGAAGCACATTGCATGGCGAGGTTGTTTTCACCCAAGATAGCTGGCTATTATGAAGAATACTATGAATC CAAAGGAGTACAATTCGTCAAAGGCACCGTCTTGTCGTCCTTCGATTTTGGTGCTGATGGACAGGTTACAGCTGTGAATCTTAGAGATGGAACTCAGTTA CCGGCAGACATGGTTGTGGTGGGAATTGGGATACGACCGAACACAAGTCTATTTGAAGGCCAACTAACTTTGGAGAAGGGTGGGATCAAAACTAATGCAA GAATGCAGACGAGCAACTCCTCGGTGTATGCAGTTGGAGACGTTGCAACATTTCCAGTCAAATTATTTGGCGAAACTCGGAGGCTGGAGCACGTTGACTG TGCCAGGAAGTCAGCAAGGCATGCTGTGTCCGCGATAATGGAGCCCCAGAAGACTGATGATTTTGATTACCTGCCGTTTTTCTACTCCAGAGTCTTTGCA TTCTCTTGGCAGTTTTACGGAGACAATGCAGGAGAAGTGGTTCACTTCGGGGACTTCTCAGGGAACAGAATTGGGGGATACTGGGTAAGTAAAGGGCACC TTGTGGGATCATTCCTTGAAGGGGGAACAAAAGAAGAGTATGAAGCCATAGCAATGGCCACAAAGGCGAAACCGGCAGTTGAAGACTTGGTTGAGCTAGA AAGTCAAGGGTTGGAATTTGCAATAGCAATCTGCAAGAAACCGGTTGAATCTGCCCCGGTTCCTCCCGTTGATGCGAATGGGAATTCGAATGCTCCTGGC CTGGATGTGGAGAAATCAGTGTATCATTGGAACGCTGCAGCTGGCGTTGTTGTTGCTGCATCGGTAGCTGCATTTGCATATTGGTATGGAAGGAGACGTA AGAGGTGGTGA
AA sequence Show only first row Show all	>Lus10013079 pacid=23149284 polypeptide=Lus10013079 locus=Lus10013079.g ID=Lus10013079.BGIv1.0 annot-version=v1.0 MGRAFVYVILGGGVAAGYAALEFTRKGVAPGELCIISEEPVAPYERPALSKGYLLPEAPSRLPSFHTCVGANEEKLSPKWYKEHGIELVLGTRVISADMR RKTLLTATGETISFKILIIATGARVLKLISTGLKLTDRSKLTFIHIGGWVKDQSARNSTSQDIFISMNETLVNNMALKLEEFGVTASDAQNVCYLRDIAD ANRLVDVVGSRAGENAVVIGGGYIGMECAASLVINKMNVAMVFPEAHCMARLFSPKIAGYYEEYYESKGVQFVKGTVLSSFDFGADGQVTAVNLRDGTQL PADMVVVGIGIRPNTSLFEGQLTLEKGGIKTNARMQTSNSSVYAVGDVATFPVKLFGETRRLEHVDCARKSARHAVSAIMEPQKTDDFDYLPFFYSRVFA FSWQFYGDNAGEVVHFGDFSGNRIGGYWVSKGHLVGSFLEGGTKEEYEAIAMATKAKPAVEDLVELESQGLEFAIAICKKPVESAPVPPVDANGNSNAPG LDVEKSVYHWNAAAGVVVAASVAAFAYWYGRRRKRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27820		ATMDAR4	monodehydroascorbate reductase...		Lus10013079 [exp]	0	1
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10034598 [exp]	4.6	0.8727
AT2G45530			RING/U-box superfamily protein...		Lus10008286 [exp]	6.4	0.8979
AT2G37480			unknown protein		Lus10024420 [exp]	6.6	0.8795
AT4G35840			RING/U-box superfamily protein...		Lus10028406 [exp]	8.1	0.8459
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10030745 [exp]	8.9	0.8529
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Lus10034601 [exp]	12.5	0.8808
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Lus10009958 [exp]	13.4	0.8432
AT3G09830			Protein kinase superfamily pro...		Lus10038711 [exp]	14.3	0.8412
AT1G55265			Protein of unknown function, D...		Lus10039182 [exp]	20.1	0.8428
AT4G03020			transducin family protein / WD...		Lus10042682 [exp]	21.0	0.8721

Compare expression of checked genes

Lus10013079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.