Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14660 308 / 5e-105 DEF2, PDF1B, ATDEF2 peptide deformylase 1B (.1.2) AT1G15390 77 / 5e-16 PDF1A, ATDEF1 peptide deformylase 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022255 [exp] 469 / 2e-168 AT5G14660 337 / 2e-117 peptide deformylase 1B (.1.2) Lus10023133 [exp] 73 / 2e-14 AT1G15390 328 / 1e-113 peptide deformylase 1A (.1) Lus10011493 [exp] 71 / 6e-14 AT1G15390 328 / 2e-114 peptide deformylase 1A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G346700 [exp] 324 / 2e-111 AT5G14660 337 / 2e-117 peptide deformylase 1B (.1.2) Potri.001G171800 [exp] 72 / 2e-14 AT1G15390 350 / 2e-122 peptide deformylase 1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01327 [flax] [poplar] Pep_deformylase Polypeptide deformylase
Representative CDS sequence Show only first row Show all	>Lus10013086 pacid=23149305 polypeptide=Lus10013086 locus=Lus10013086.g ID=Lus10013086.BGIv1.0 annot-version=v1.0 ATGGCGTCCTATGCGGCTTCTTTGTGCTCTTATTCTTTGTCCTCCTCGCTTAGGCGAGCTCTGTTCCTTCCCACCCTCCATTCCTGTCAATCATTTTACG CTTTCTCTTCAGTAGCTTCTCGCTCCATTTCCACTACCGTTAGTAGCCCCAAACCTCCTGTTTGTATGGCGGTTCGCAGCGGACAGACCAAGCGAGGAGG TTCCTCGTTCAAAGACGACGAACTAGCTACTTCTTCTGATCTTCAATTTGAGGCACCGCTTAAAATTGTGGAGTACCCTGACCCTATATTGAGAAGGAAG AACAAAAGGATAGGTTTGTTTGACGACAACTTGAAGAAATTGGTGGATGAGATGTTTGATATTATGTACAAGCGTGAACGGTTTATAGCAGCAGGAATTT CCGCTCCTAGATTGAGCTTTATCCAGAAGTTAACTGTTACTATAAGACTGAGTCATTCACCACACCGTCTTGTTCGCATAAGCCATTTAAAATTCCTTCC TGATGGCATTGGACTCTCAGCACCACAAGTTGGGATCAATGTTCAACTTATGGTGTTTAACCCTTCCGGTGAACCTGATGAAGGGAAGGAAATTGTTCTG GTTAATCCAAGAGTCAGTAGATACTCAAAGAAGAGGGTGCTTTTCGAGGAAGGATGTCCGTCTTTTCCTGGGATATATGCTGATGTAGATAGACCCGAAT CTGTGAAGATTGATGCTAGGGATGTTACTGACGCAAACTTTACTGTTAACTTATCTGAACTTCCTGCTCGGGTTTTCCAGCACGAATTTGACCATTTAGA GGGGATTCTTTTCTTTGATAGAATGTCAGGAGAAGTACTTGACAGAATTTATACGCAGCTACAGGCCTTAGAAAAGAAGTATGAAGACAAAACCGGACTC CCAAGCCCTGAAAAGGTAGAAGCACCAAGGAAACGAGTCTCTGCTGCGGGCTTTGGAAAGACATGA
AA sequence Show only first row Show all	>Lus10013086 pacid=23149305 polypeptide=Lus10013086 locus=Lus10013086.g ID=Lus10013086.BGIv1.0 annot-version=v1.0 MASYAASLCSYSLSSSLRRALFLPTLHSCQSFYAFSSVASRSISTTVSSPKPPVCMAVRSGQTKRGGSSFKDDELATSSDLQFEAPLKIVEYPDPILRRK NKRIGLFDDNLKKLVDEMFDIMYKRERFIAAGISAPRLSFIQKLTVTIRLSHSPHRLVRISHLKFLPDGIGLSAPQVGINVQLMVFNPSGEPDEGKEIVL VNPRVSRYSKKRVLFEEGCPSFPGIYADVDRPESVKIDARDVTDANFTVNLSELPARVFQHEFDHLEGILFFDRMSGEVLDRIYTQLQALEKKYEDKTGL PSPEKVEAPRKRVSAAGFGKT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Lus10013086 [exp]	0	1
AT3G23700			Nucleic acid-binding proteins ...		Lus10021484 [exp]	1.0	0.8769
AT4G01310			Ribosomal L5P family protein (...		Lus10010251 [exp]	3.5	0.8528
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Lus10017011 [exp]	4.9	0.8487
AT5G64010			unknown protein		Lus10036635 [exp]	6.9	0.8207
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Lus10010088 [exp]	7.0	0.8207
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013075 [exp]	7.1	0.8018
AT5G10320			unknown protein		Lus10000634 [exp]	9.5	0.8137
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10035028 [exp]	10.5	0.8261
AT4G19130			Replication factor-A protein 1...		Lus10003955 [exp]	11.8	0.7804
AT5G55530			Calcium-dependent lipid-bindin...		Lus10043169 [exp]	12.7	0.8010

Compare expression of checked genes

Lus10013086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.