Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14590 543 / 0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) AT1G54340 466 / 3e-162 ICDH isocitrate dehydrogenase (.1) AT1G65930 458 / 4e-159 cICDH cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022252 [exp] 573 / 0 AT5G14590 714 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) Lus10010431 [exp] 461 / 5e-160 AT1G54340 747 / 0.0 isocitrate dehydrogenase (.1) Lus10012111 [exp] 459 / 3e-159 AT1G54340 746 / 0.0 isocitrate dehydrogenase (.1) Lus10007380 [exp] 451 / 2e-156 AT1G65930 741 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Lus10020798 [exp] 447 / 7e-155 AT1G65930 744 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G347800 [exp] 527 / 0 AT5G14590 771 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) Potri.010G176000 [exp] 483 / 1e-168 AT1G65930 744 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.008G080500 [exp] 483 / 2e-168 AT1G65930 734 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.004G074900 [exp] 482 / 2e-168 AT1G65930 781 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.017G144541 [exp] 481 / 8e-168 AT1G65930 779 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0270 [flax] [poplar] Iso_DH PF00180 [flax] [poplar] Iso_dh Isocitrate/isopropylmalate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10013090 pacid=23149304 polypeptide=Lus10013090 locus=Lus10013090.g ID=Lus10013090.BGIv1.0 annot-version=v1.0 ATGTCAGACGCTGCAGCGATGTTGTCGTCTTCCAAGTCTTCTCTAGCCCTGAGAAACCCTAGTTTCTCATTCTCTTCGGGTTCTACGTTCTTAAGTGGCA GAGGAAAAGGAGGAGCTGGAACCGTCGGGGAAAGTGTCATTAGTTTCAGCTCTCCGCTAGTTCGCGCCATTTCGCTTCGTTGCTCTGCTTCTGCTTCCAA TTCCGATCGAGTCAAAGTTCAAAATCCGATTGTTGAAATGGACGGTGATGAAATGACCAGGATCATCTGGAAAACAATTAAAGAAAAGCTTATATTCCCT TATCTCGACTTGGATATCAAGTATTTTGACTTGGGAATAACGAATCGTGATGCTACTGATGATAAAGTCACCGTAGAAAGTGCCCAAGCCACCCTCAAGT ACAATGTTGCTGTTAAATGTGCTACTATTACTCCTGATGAGACTAGAGTAAAGGAGTTCGGCCTTAAGTCCATGTGGAGGAGTCCTAATGGCACAATTCG CAACATCTTAGATGTATGGTATATATACTGGTTCACCTTGGTTGTCTTATCTCACTTTGTGGTACTGTCTTTCGTGAACCAATTATCTGCCGCAACATCC CAAGAATTGTTGCCGGTAACATTGGAACTTTTGCCTACTACATTTGTAAATGATATGGCAATAGTGCCGGTGCTTACAAATCAGTCAACAGGTTGGAAGA AACCAATATGCATTGGTAGGCATGCCTTTGGAGATCAGTACCGTGCCACTGACGCTGTTATAAAAGGACCTGGAAAGCTGAAAATGGTTTTTGTCCCAGA AGGCGGTGATACCCCGATGGAGCTTGATGTTCATGATTTTAAAGGTCCTGGTGTGGCATTGGCAATGTATAATGTTGACGAGTCTATTCAAGCTTTTGCT GAGTCGTCCATGGCAATGGCGTTTGCAAAGAAATGGCCTCTATACTTGAGTACCAAAAACACAATTCTTAAAAAGTACGATGGCAGGTTTAAGGACATTT TCCAGGATGTTTACAAGCAGAACTGGAGGAACATGTTTGAAGAACATTCTATTTGGTATGAGCATCGGCTAATAGATGACATGGTCGCTTATGCGATGAA AAGTGAAGGTGGATATGTCTGGGCTTGCAAAAATTACGACGGAGATGTCCAAAAAGATTGGGTACCAAGTGAAAGAGTGGCCGATGGACTTACTTCTTGT TGGTGCCAACCATTTGTAGGATTTGGCTCATTGGGTCTTATGACATCCGTGCTGGTGTGTAGTAAGCCATCAATTTTTCCTTTTTTATATGATTCCATTT GTATGTCAACCAGGCATTACAGATTACATCAGAAAGGTCAAGAAACCAGCACCAACAGTATTGCTTCGATTTTTGCATGGTCACGAGGATTAGAACATAG GGTATCGAGGGAACTTTACTTGAACACAGAAGAGTTTATTGACTCCGTTGCACAAAATCTGGAGTCGAAGCTCCGAAAGCGACAGCAGTTTGAAACATGG AGTCCATCCAGCCAGCCAGCCAGCCATGGAAAACGGGGACTATAG
AA sequence Show only first row Show all	>Lus10013090 pacid=23149304 polypeptide=Lus10013090 locus=Lus10013090.g ID=Lus10013090.BGIv1.0 annot-version=v1.0 MSDAAAMLSSSKSSLALRNPSFSFSSGSTFLSGRGKGGAGTVGESVISFSSPLVRAISLRCSASASNSDRVKVQNPIVEMDGDEMTRIIWKTIKEKLIFP YLDLDIKYFDLGITNRDATDDKVTVESAQATLKYNVAVKCATITPDETRVKEFGLKSMWRSPNGTIRNILDVWYIYWFTLVVLSHFVVLSFVNQLSAATS QELLPVTLELLPTTFVNDMAIVPVLTNQSTGWKKPICIGRHAFGDQYRATDAVIKGPGKLKMVFVPEGGDTPMELDVHDFKGPGVALAMYNVDESIQAFA ESSMAMAFAKKWPLYLSTKNTILKKYDGRFKDIFQDVYKQNWRNMFEEHSIWYEHRLIDDMVAYAMKSEGGYVWACKNYDGDVQKDWVPSERVADGLTSC WCQPFVGFGSLGLMTSVLVCSKPSIFPFLYDSICMSTRHYRLHQKGQETSTNSIASIFAWSRGLEHRVSRELYLNTEEFIDSVAQNLESKLRKRQQFETW SPSSQPASHGKRGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14590			Isocitrate/isopropylmalate deh...		Lus10013090 [exp]	0	1
AT4G11640		ATSR	serine racemase (.1)		Lus10008490 [exp]	1.4	0.9351
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009047 [exp]	3.0	0.9282
AT3G52640			Zn-dependent exopeptidases sup...		Lus10007387 [exp]	5.0	0.9146
					Lus10024551 [exp]	6.2	0.9050
AT4G10970			unknown protein		Lus10023075 [exp]	6.2	0.9334
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10037812 [exp]	6.9	0.9089
AT4G32050			neurochondrin family protein (...		Lus10023067 [exp]	8.6	0.8774
AT2G34730			myosin heavy chain-related (.1...		Lus10023264 [exp]	8.7	0.8988
AT5G14520			pescadillo-related (.1)		Lus10001361 [exp]	9.2	0.8896
AT5G44090			Calcium-binding EF-hand family...		Lus10003628 [exp]	9.2	0.9053

Compare expression of checked genes

Lus10013090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.