Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004279 [exp] 92 / 4e-22 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10034953 [exp] 64 / 2e-12 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10012975 [exp] 64 / 2e-12 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10019234 [exp] 44 / 1e-05 AT5G10530 76 / 1e-16 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020456 [exp] 40 / 0.0003 AT5G10530 519 / 1e-176 Concanavalin A-like lectin protein kinase family protein (.1) Lus10027340 [exp] 0 / 1 AT5G65600 63 / 2e-12 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G004200 [exp] 51 / 6e-08 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013093 pacid=23149291 polypeptide=Lus10013093 locus=Lus10013093.g ID=Lus10013093.BGIv1.0 annot-version=v1.0 ATGAAATTTGCCAACTTGTCTAAAAACTACGGCGACGGGATGACTTTCTTCCTATCGTTGGCGAACTCCCAGATTACCCCGAAAACTGCCTTGAACTCTT ACAAGAGCCATCAGATCATGGCGGTTGAGTTCCACACTAGCTGGAATTCTTGGGATCCGAGCGACGACCACGTCGGTTCGACGTCAACTCGATCCGCTCC GTCGCAGTATAGAATTGGGAAGAACGATTCAACCTTCAGTAGGAAACCAGTGGAGTGGTGTGACATCGTCGGATTTGATATTTATGAGCTCGGAGATGTT AATGATGACGTCTCAAGAGCGGCGGTGGGAGTTGGAGACCAGATGCCATCGACGCCGAGTAATGTAACTTGTTCCAAGGAGATTGTGAATTCGCCAGCGG ATAGAGGATCGATTTCAGAGATGAGTCGGTGTCGAAATCGAGGAGTACGGAATGGACGGCGAGGAGGAATGGGGAGGAGGAGGTTGTGA
AA sequence Show only first row Show all	>Lus10013093 pacid=23149291 polypeptide=Lus10013093 locus=Lus10013093.g ID=Lus10013093.BGIv1.0 annot-version=v1.0 MKFANLSKNYGDGMTFFLSLANSQITPKTALNSYKSHQIMAVEFHTSWNSWDPSDDHVGSTSTRSAPSQYRIGKNDSTFSRKPVEWCDIVGFDIYELGDV NDDVSRAAVGVGDQMPSTPSNVTCSKEIVNSPADRGSISEMSRCRNRGVRNGRRGGMGRRRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10013093 [exp]	0	1
AT5G35732			unknown protein		Lus10006404 [exp]	7.4	0.8223
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10033660 [exp]	8.8	0.7912
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10013483 [exp]	11.9	0.8005
AT2G18060	NAC	ANAC037, VND1	Arabidopsis NAC domain contain...		Lus10041822 [exp]	15.9	0.7844
AT1G24110			Peroxidase superfamily protein...		Lus10042144 [exp]	16.4	0.7530
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007948 [exp]	17.7	0.8049
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10026198 [exp]	20.4	0.7994
AT4G33920			Protein phosphatase 2C family ...		Lus10011521 [exp]	20.7	0.7863
AT1G08290	C2H2ZnF	WIP3	WIP domain protein 3 (.1)		Lus10020597 [exp]	23.5	0.7972
AT3G18420			Protein prenylyltransferase su...		Lus10035087 [exp]	23.5	0.7831

Compare expression of checked genes

Lus10013093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.