Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55260 185 / 1e-58 EP128, PPX-2, PPX2 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) AT4G26720 180 / 9e-57 PPX-1, EP129, EP124, PPX1 PROTEIN PHOSPHATASE X-1, protein phosphatase X 1 (.1) AT3G58500 143 / 2e-42 PP2A-4, EP7, PP2A-3 protein phosphatase 2A-4 (.1) AT2G42500 142 / 1e-41 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3) AT1G59830 139 / 2e-41 PP2A-1 protein phosphatase 2A-2 (.1.2) AT1G10430 139 / 6e-41 PP2A-2 protein phosphatase 2A-2 (.1) AT1G69960 135 / 2e-39 PP2A serine/threonine protein phosphatase 2A (.1) AT1G50370 116 / 7e-32 AtFYPP1 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT3G19980 115 / 1e-31 STPP, ATFYPP3, EMB2736 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) AT2G39840 92 / 2e-22 TOPP4 type one serine/threonine protein phosphatase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016576 [exp] 192 / 2e-60 AT5G55260 615 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Lus10025174 [exp] 142 / 9e-42 AT2G42500 619 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10039185 [exp] 140 / 3e-41 AT2G42500 624 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10042160 [exp] 141 / 5e-41 AT1G10430 611 / 0.0 protein phosphatase 2A-2 (.1) Lus10033122 [exp] 140 / 5e-41 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Lus10030810 [exp] 140 / 5e-41 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10013287 [exp] 140 / 5e-41 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10016053 [exp] 140 / 5e-41 AT2G42500 610 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10036657 [exp] 140 / 6e-41 AT1G10430 598 / 0.0 protein phosphatase 2A-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G092200 [exp] 191 / 8e-61 AT5G55260 613 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.001G358700 [exp] 186 / 3e-59 AT5G55260 609 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.016G062000 [exp] 147 / 7e-44 AT3G58500 622 / 0.0 protein phosphatase 2A-4 (.1) Potri.006G196100 [exp] 145 / 3e-43 AT3G58500 620 / 0.0 protein phosphatase 2A-4 (.1) Potri.003G217900 [exp] 144 / 2e-42 AT2G42500 627 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.010G039700 [exp] 142 / 5e-42 AT1G10430 609 / 0.0 protein phosphatase 2A-2 (.1) Potri.001G007800 [exp] 142 / 7e-42 AT2G42500 628 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.008G191600 [exp] 141 / 1e-41 AT1G10430 610 / 0.0 protein phosphatase 2A-2 (.1) Potri.015G068300 [exp] 140 / 3e-41 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Potri.012G073300 [exp] 140 / 3e-41 AT1G10430 605 / 0.0 protein phosphatase 2A-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10013094 pacid=23149293 polypeptide=Lus10013094 locus=Lus10013094.g ID=Lus10013094.BGIv1.0 annot-version=v1.0 ATGTCAGACCTAGATAGGCAGATTGAGCAGCTTAAGAAGTGCGAGCCTTTGAAAGAATCGGAAGTCAAGGCTCTGTGCTTGAAGGCTATGGAGATTCTCG TCGAAGAGAGCAACGTTCAGCGCGTGGACGCCCCTGTCACTATATGTGGAGACATTCATGGACAGTTCTATGACCTGAAGGAGCTTTTCAAAGTAGGAGG AGATTGCCCAAAAACTAATTACTTATTTCTTGGAGATTTTGTTGATAGAGGATTCTACTCGGTTGAGACATTTTTGCTCCTGCTTGCCCTTAAGGTATTT TCTTCTCTCCAAACAACTGTATTTCCCTTTTCTTCACTCCCTCTTAATGTTTCCCTTGACCTCAGCAGCCTTAGTCAATCTGACTACTGGATGGCATCAT TTCTGTTTAACTTCGATTCTGAGATCTTGACATTTGTTCTTGTGAGATACCTGGAAACATTTTCCCCCAGTTGCTACGAAAGCAAGTATGAACTGCAGCT AGCAAATGATGTTTTGCACTGA
AA sequence Show only first row Show all	>Lus10013094 pacid=23149293 polypeptide=Lus10013094 locus=Lus10013094.g ID=Lus10013094.BGIv1.0 annot-version=v1.0 MSDLDRQIEQLKKCEPLKESEVKALCLKAMEILVEESNVQRVDAPVTICGDIHGQFYDLKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVF SSLQTTVFPFSSLPLNVSLDLSSLSQSDYWMASFLFNFDSEILTFVLVRYLETFSPSCYESKYELQLANDVLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55260		EP128, PPX-2, P...	PROTEIN PHOSPHATASE X -2, prot...		Lus10013094 [exp]	0	1
					Lus10001309 [exp]	6.3	0.8843
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10035589 [exp]	10.2	0.8993
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10008636 [exp]	14.6	0.8944
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010375 [exp]	15.7	0.8943
AT2G29200		APUM1	pumilio 1 (.1)		Lus10000515 [exp]	16.1	0.8674
AT5G58100			unknown protein		Lus10008551 [exp]	21.6	0.8677
AT3G48470		EMB2423	embryo defective 2423 (.1)		Lus10001101 [exp]	22.8	0.8730
AT2G35920			RNA helicase family protein (....		Lus10009660 [exp]	23.0	0.8405
AT5G36930			Disease resistance protein (TI...		Lus10004747 [exp]	28.8	0.8625
					Lus10005601 [exp]	29.4	0.8748

Compare expression of checked genes

Lus10013094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.