Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55260 388 / 7e-137 EP128, PPX-2, PPX2 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) AT4G26720 376 / 3e-132 PPX-1, EP129, EP124, PPX1 PROTEIN PHOSPHATASE X-1, protein phosphatase X 1 (.1) AT1G10430 279 / 5e-94 PP2A-2 protein phosphatase 2A-2 (.1) AT1G59830 278 / 1e-93 PP2A-1 protein phosphatase 2A-2 (.1.2) AT1G69960 278 / 2e-93 PP2A serine/threonine protein phosphatase 2A (.1) AT1G50370 276 / 5e-93 AtFYPP1 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G42500 273 / 3e-92 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3) AT3G58500 273 / 2e-91 PP2A-4, EP7, PP2A-3 protein phosphatase 2A-4 (.1) AT3G19980 272 / 2e-91 STPP, ATFYPP3, EMB2736 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) AT5G43380 192 / 1e-59 TOPP6 type one serine/threonine protein phosphatase 6 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016576 [exp] 403 / 1e-141 AT5G55260 615 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Lus10033122 [exp] 279 / 6e-94 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Lus10013287 [exp] 278 / 1e-93 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10030810 [exp] 278 / 1e-93 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10010156 [exp] 277 / 2e-93 AT1G50370 617 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10017361 [exp] 277 / 3e-93 AT1G50370 617 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10042160 [exp] 278 / 5e-93 AT1G10430 611 / 0.0 protein phosphatase 2A-2 (.1) Lus10013456 [exp] 276 / 1e-92 AT3G19980 623 / 0.0 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) Lus10041015 [exp] 274 / 2e-92 AT1G50370 570 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G092200 [exp] 392 / 9e-139 AT5G55260 613 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.001G358700 [exp] 391 / 2e-138 AT5G55260 609 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.015G068300 [exp] 280 / 2e-94 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Potri.008G003200 [exp] 278 / 1e-93 AT1G50370 624 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.012G073300 [exp] 277 / 2e-93 AT1G10430 605 / 0.0 protein phosphatase 2A-2 (.1) Potri.008G191600 [exp] 277 / 4e-93 AT1G10430 610 / 0.0 protein phosphatase 2A-2 (.1) Potri.010G039700 [exp] 276 / 5e-93 AT1G10430 609 / 0.0 protein phosphatase 2A-2 (.1) Potri.010G254500 [exp] 276 / 7e-93 AT1G50370 617 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.001G007800 [exp] 273 / 2e-91 AT2G42500 628 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.003G217900 [exp] 273 / 2e-91 AT2G42500 627 / 0.0 protein phosphatase 2A-3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10013095 pacid=23149294 polypeptide=Lus10013095 locus=Lus10013095.g ID=Lus10013095.BGIv1.0 annot-version=v1.0 ATGTCAAATCTGGCTGTCACAAATGTTTCTAGAGTATGCCTTGTGTTTTCTATAAAGTTGTCGCATCAACAATATTACATTTGTTATTTCTCCTTCCATA CTGCTTTTCCCAACCAAGGAGTTCCTGATTGTCAGGTGCGACATCCAGATAGAATAACTCTGATCAGAGGAAATCATGAGAGCCGACAGATAACACAGGT GTATGGTTTCTATGATGAGTGCCTACGAAAATACGGCTCTGTTAATGTGTGGAGATACTGCACTGACATATTTGATTACCTGAGTTTGTCAGCCCTCATT GAGAACAAAGTTTTCAGTGTCCACGGTGGCCTTTCTCCTGCCATATCAACCTTGGATCAGATCCGAACCATTGATCGAAAGCAAGAAGTGCCTCATGATG GCGCCATGTGTGACCTAATGTGGTCAGATCCTGAAGATATTGTGGATGGTTGGGGTTTGAGCCCACGTGGTGCAGGGTTCCTGTTTGGTGGCAGCGTGGT TAGTTCTTTTAACCACTCAAATAATATAGACTACATTTGTCGCGCTCATCAGTTGGTTATGGAAGGGTACAAATGGATGTTTAATGATCAAATCGTTACT GTTTGGTCGGCTCCAAACTACTGTTACAGATGTGGTAATGTCGCTGCAATCCATGAGCTGGATGAGAACCTCAACAAACAATTTCGTGTGTTTCATGCTG CCCCACAGGTTCTCGCTTCACTCCATTGTTCTTTGTCTTTCCACATTTGCTGTGATCATGTGCAAGCAAGAATGATGGTATGCGTATGTGAGTAA
AA sequence Show only first row Show all	>Lus10013095 pacid=23149294 polypeptide=Lus10013095 locus=Lus10013095.g ID=Lus10013095.BGIv1.0 annot-version=v1.0 MSNLAVTNVSRVCLVFSIKLSHQQYYICYFSFHTAFPNQGVPDCQVRHPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLSLSALI ENKVFSVHGGLSPAISTLDQIRTIDRKQEVPHDGAMCDLMWSDPEDIVDGWGLSPRGAGFLFGGSVVSSFNHSNNIDYICRAHQLVMEGYKWMFNDQIVT VWSAPNYCYRCGNVAAIHELDENLNKQFRVFHAAPQVLASLHCSLSFHICCDHVQARMMVCVCE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55260		EP128, PPX-2, P...	PROTEIN PHOSPHATASE X -2, prot...		Lus10013095 [exp]	0	1
AT2G13650		GONST1	golgi nucleotide sugar transpo...		Lus10005387 [exp]	2.4	0.8646
AT3G56320			PAP/OAS1 substrate-binding dom...		Lus10029045 [exp]	22.1	0.8656
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10033243 [exp]	29.8	0.8445
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Lus10008205 [exp]	31.9	0.8396
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10016999 [exp]	33.5	0.8598
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10041016 [exp]	34.6	0.8588
AT4G32480			Protein of unknown function (D...		Lus10017723 [exp]	51.9	0.8332
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10015816 [exp]	68.5	0.8463
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10034921 [exp]	74.6	0.8333
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Lus10010531 [exp]	74.8	0.8332

Compare expression of checked genes

Lus10013095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.