Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013097 pacid=23149288 polypeptide=Lus10013097 locus=Lus10013097.g ID=Lus10013097.BGIv1.0 annot-version=v1.0 ATGGAGTTTTTTATTGATATTCCCCTACCGAGTAGGTGTAATTGTCCTCTCAGGCAGGCGGGTCAGATCGAATTGATTTTGTGTATGCAAATTTGCCAGA TTTTTGCTACTGTTGTGGTATACAGGGTCATACTATTTCTTCTTGTGAGCTCCGCAGGGAGCATGAGGAGTTTTTTCAAGCTTCATCCTTCTAGGTATGG CCTCCATATGAGAGTTGTGATGAGACAGAAACCTCCCCGTGAGCGCTTGCCTTCATTGCCTAGGGAATCATCGTCAAGTGGTAGTTCTTGTTCCGGGTCT GGCTGCACTTTGGCCTCAATCCAGCTTCCCTCGGAGGTGCCGCCTCCGAGTTCAGCTGGGTTGAATATTGGCCATATTTCTCAGCCTCTCTCGGAGTTAA ATCTTCTGTCTTCTCCCATGGATGTTACTGATCCAGTCAAGCTTGCTCATTTGGTCTGTCAACCGGTGATTCTACCTGAATGTCATTGCTATCGGATGGC TTGGCAGAATTTGTGTCGTAAACGAAGATTGGAGGATGGTACTGAGTCTGATAATGAACAGGCGGTTCTTCAATCTAGACTTGATCGTAATTCTGTTGAG GTTAAGTGGGTTGGTCAAGGTTTTTTGCAACATACTTGGACTTGA
AA sequence Show only first row Show all	>Lus10013097 pacid=23149288 polypeptide=Lus10013097 locus=Lus10013097.g ID=Lus10013097.BGIv1.0 annot-version=v1.0 MEFFIDIPLPSRCNCPLRQAGQIELILCMQICQIFATVVVYRVILFLLVSSAGSMRSFFKLHPSRYGLHMRVVMRQKPPRERLPSLPRESSSSGSSCSGS GCTLASIQLPSEVPPPSSAGLNIGHISQPLSELNLLSSPMDVTDPVKLAHLVCQPVILPECHCYRMAWQNLCRKRRLEDGTESDNEQAVLQSRLDRNSVE VKWVGQGFLQHTWT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10013097 [exp]	0	1
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Lus10017408 [exp]	6.9	0.8873
AT1G06510			unknown protein		Lus10001505 [exp]	6.9	0.8779
AT3G62300		ATDUF7	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10000430 [exp]	8.2	0.9044
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10008636 [exp]	8.2	0.9135
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10023504 [exp]	9.5	0.9030
AT1G69290			Pentatricopeptide repeat (PPR)...		Lus10036908 [exp]	13.0	0.8881
AT5G21160			LA RNA-binding protein (.1.2.3...		Lus10041277 [exp]	13.3	0.8801
AT3G54440			glycoside hydrolase family 2 p...		Lus10039520 [exp]	14.0	0.9000
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Lus10021336 [exp]	14.3	0.8917
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Lus10032537 [exp]	15.5	0.8815

Compare expression of checked genes

Lus10013097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.