Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013098 pacid=23149313 polypeptide=Lus10013098 locus=Lus10013098.g ID=Lus10013098.BGIv1.0 annot-version=v1.0 ATGACTCACAAAGGAGGAGGGTCGGGTGGAAAGTCTAGTCATCCTAATGCTCAAAAGAATAAAACACAGGCTAGACCAACGGGGAAGAATGTGAATTCCG ATGGTGCATGGAACCTATTCTCTTCGGGTGGAAGGTTTGTTAGCAGCTGGGAAAGCCTGGTGTCGATGTTGAAGAACAAAGTTCTGCAGGTTTGGCGGCT TCAGAGTGATCTAAAGGTGTCTTCCATTGGTCACAATCATTTTGTTTACTCCTTCTTCGATAAGGGGGATAAAGTCCGGATTAAGAATGAGAGTTCTTGG ATGGTGATGCAATCTCATTTGATTCTTAAGAGTTGGGATCATTCCAGTTCACCTGCTGAAGTTCAGATTTATCAGAAGAGGAGAAGAGGGATGCAGGCTG TGCAACATCCAAAGCGGGAAATGAAGAACACTCATCATTGTTGGAGGAAGATGCGCAGAGTGACTAGATTGCAATGGAGTAAAAGTTGGATGATTGAACA TGCAACTGAGCTGCTTTTGGTTTAA
AA sequence Show only first row Show all	>Lus10013098 pacid=23149313 polypeptide=Lus10013098 locus=Lus10013098.g ID=Lus10013098.BGIv1.0 annot-version=v1.0 MTHKGGGSGGKSSHPNAQKNKTQARPTGKNVNSDGAWNLFSSGGRFVSSWESLVSMLKNKVLQVWRLQSDLKVSSIGHNHFVYSFFDKGDKVRIKNESSW MVMQSHLILKSWDHSSSPAEVQIYQKRRRGMQAVQHPKREMKNTHHCWRKMRRVTRLQWSKSWMIEHATELLLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10013098 [exp]	0	1
AT5G08450			unknown protein		Lus10004298 [exp]	3.0	0.7543
AT5G50350			unknown protein		Lus10034861 [exp]	3.5	0.7064
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10014586 [exp]	6.3	0.7283
AT2G18465			Chaperone DnaJ-domain superfam...		Lus10033506 [exp]	17.0	0.6067
AT3G53010			Domain of unknown function (DU...		Lus10042636 [exp]	17.9	0.6434
AT1G73170			P-loop containing nucleoside t...		Lus10015985 [exp]	19.2	0.7460
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10023810 [exp]	21.0	0.6672
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10006821 [exp]	21.2	0.6949
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10040260 [exp]	21.4	0.7507
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10024728 [exp]	28.5	0.6503

Compare expression of checked genes

Lus10013098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.