Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07100 207 / 2e-62 AtSEC24A, SEC24A, ERMO2 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) AT3G44340 61 / 3e-11 CEF clone eighty-four (.1.2) AT4G32640 58 / 3e-10 Sec23/Sec24 protein transport family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016597 [exp] 308 / 1e-99 AT3G07100 1212 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Lus10004122 [exp] 56 / 3e-09 AT4G32640 1209 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Lus10000939 [exp] 56 / 3e-09 AT4G32640 1241 / 0.0 Sec23/Sec24 protein transport family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G211100 [exp] 247 / 6e-77 AT3G07100 1296 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Potri.008G049700 [exp] 236 / 5e-73 AT3G07100 1306 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Potri.013G035800 [exp] 57 / 4e-10 AT4G32640 1219 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.005G049100 [exp] 48 / 9e-07 AT4G32640 1238 / 0.0 Sec23/Sec24 protein transport family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [flax] [poplar] ADF PF00626 [flax] [poplar] Gelsolin Gelsolin repeat
Representative CDS sequence Show only first row Show all	>Lus10013100 pacid=23149308 polypeptide=Lus10013100 locus=Lus10013100.g ID=Lus10013100.BGIv1.0 annot-version=v1.0 ATGGCATTACCTGTTAAGAATTTGTTGAAACTTTTGTATCCTAGCTTAGTTCGACTAGATGACTATCTCTTAAAGCCATCTGCTGATGAAGGTGAGCTTG GAAATGTGATGAAGAGATTACCACTTACAGCAGACAGCCTTGATTCTAGAGGCCTTTATATCTATGATGACGGGCTTCAGTTTGTTCTATGGTTCGGTGG AACGCTATCACCTGATATTGCTATGAACTTACTGGGGCCGGATGCTGCAGTTGAGCTATCTAGGGTTACTCTGACGGGGCAGGAAACAGAAATGTCAAGA AAACTAATGCTTTTACTGAAGAAGTTACGGGCGAGCGATCCGTCATACTATCAGTTGTGTAATCTTGTAAGACAAGGCGAACAACCCAGAGAAGGGTTTA TGGTACTAACAAAATTAGTGGAGGATCCAGCGGGTGGAACCAATGGTTATGTTGACTGGATGATTCAACTACATCGTCTAGTCCAACAAAATGCGTGA
AA sequence Show only first row Show all	>Lus10013100 pacid=23149308 polypeptide=Lus10013100 locus=Lus10013100.g ID=Lus10013100.BGIv1.0 annot-version=v1.0 MALPVKNLLKLLYPSLVRLDDYLLKPSADEGELGNVMKRLPLTADSLDSRGLYIYDDGLQFVLWFGGTLSPDIAMNLLGPDAAVELSRVTLTGQETEMSR KLMLLLKKLRASDPSYYQLCNLVRQGEQPREGFMVLTKLVEDPAGGTNGYVDWMIQLHRLVQQNA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Lus10013100 [exp]	0	1
AT3G25680			unknown protein		Lus10021714 [exp]	4.7	0.7788
AT5G35180			Protein of unknown function (D...		Lus10040011 [exp]	11.0	0.7596
AT3G55005		TON1B	tonneau 1b (TON1b) (.1)		Lus10030297 [exp]	14.8	0.7613
AT1G28250			unknown protein		Lus10015429 [exp]	16.4	0.7316
AT1G06260			Cysteine proteinases superfami...		Lus10017674 [exp]	18.2	0.7336
AT5G66090			unknown protein		Lus10028414 [exp]	20.3	0.7314
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10011976 [exp]	21.6	0.7203
AT3G55360		ECR, CER10, ATT...	ENOYL-COA REDUCTASE, ECERIFERU...		Lus10001695 [exp]	23.5	0.7257
AT5G62140			unknown protein		Lus10038887 [exp]	24.9	0.7511
AT3G12540			Protein of unknown function, D...		Lus10023409 [exp]	25.4	0.6983

Compare expression of checked genes

Lus10013100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.