Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07100 140 / 3e-36 AtSEC24A, SEC24A, ERMO2 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016597 [exp] 444 / 1e-148 AT3G07100 1212 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G049700 [exp] 213 / 1e-61 AT3G07100 1306 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Potri.010G211100 [exp] 211 / 8e-61 AT3G07100 1296 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013101 pacid=23149279 polypeptide=Lus10013101 locus=Lus10013101.g ID=Lus10013101.BGIv1.0 annot-version=v1.0 ATGGGCACTGAGAAACCTGGTCGTCCAAGTTTCCCAGCGAGACCTTCAACCACTCCTTTTGCTACTGCTCCCCCAACAATGACTCCATTTTCCTCTTCTG GTCCAATGGTTGGACCTGAGGCCTCTGCTTTGAGGCCTGCTCGACCATCTCTTCCACCGAGTACTTTGCCATCTATGACGGCAGGATCAGCAGGTCTAGT GGAGGCCCCAGGCTTCAGGCCAGCACCGCCATCTCGTTTTTATGATCCTTCCTTGCCTGCCCTGCCACCATCGTATGTGCTGCCAGCTTCTGGAACATTC AACCGCTACCCAACTCCACCATTTGCATCTATGCCCCCAGGTCCTACTCATTCTCCAGTTATAGGGCAGCCACCATTTCAGCCTCCTCCCAGTCAGGCAT CACCTCCTATATCTTTCCGGTCGCAGGGACAGGTTCCTGTAGTGCCTATGGGATCTTCGCCAGTAGGAGGAAATCCTCCTCGGGTATCACCAGATTTGCC GTTTCCTGCATCGAGGCCAAATTTTCAGCCATCTTTCCCCCCTTCAGTTTCGGGGTATCCTACAGCTGGAGCCCCTTCACAGCCACCCTTCCCTGGATAT GTTAAGCAAGCAAATGCAGTTCCACAAGGCCCTCCTGTACATTCACCTTTTCAAGCTACACAAGGAGGGTATGTACCTTCTGCACCAACACCATCCCCAC ATTTTCTTTCTCAACAAGGCAGTCTAGTTCAAGCTCCACCGTTAGCTTCTCCATTTGGTTTGCACTCCAGGGACCAGATGCAACATTCAGGCACCATGCC ACCTATGGGTGGCATGCAAGCTTTGGTAGAAGATTTCAGTTCACTATCTATTGGGTCTATTCCAGGATCGATTGAACCCGGGGTTGATTCGAAAGCATTT CCTAGGCCACTGGAAGGTGATGTGGAGCCCAATGTATTGCCTGAGCTAACCTCATTGAATTGCAATGCTAGATATCTTCGGCTTACAACAAATGCCATTC CAAATTCCCAGTCTTTAGCCTCAAGGTGGCATTTGCCACTTGGTGCAGTTGTTTGTCCTCTCGCTGAAGCACCAGAAGGGGTTGGCGTTCTAACCATATT CAATTGA
AA sequence Show only first row Show all	>Lus10013101 pacid=23149279 polypeptide=Lus10013101 locus=Lus10013101.g ID=Lus10013101.BGIv1.0 annot-version=v1.0 MGTEKPGRPSFPARPSTTPFATAPPTMTPFSSSGPMVGPEASALRPARPSLPPSTLPSMTAGSAGLVEAPGFRPAPPSRFYDPSLPALPPSYVLPASGTF NRYPTPPFASMPPGPTHSPVIGQPPFQPPPSQASPPISFRSQGQVPVVPMGSSPVGGNPPRVSPDLPFPASRPNFQPSFPPSVSGYPTAGAPSQPPFPGY VKQANAVPQGPPVHSPFQATQGGYVPSAPTPSPHFLSQQGSLVQAPPLASPFGLHSRDQMQHSGTMPPMGGMQALVEDFSSLSIGSIPGSIEPGVDSKAF PRPLEGDVEPNVLPELTSLNCNARYLRLTTNAIPNSQSLASRWHLPLGAVVCPLAEAPEGVGVLTIFN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Lus10013101 [exp]	0	1
AT3G63460		EMB2221	transducin family protein / WD...		Lus10005323 [exp]	1.4	0.9660
AT2G07360			SH3 domain-containing protein ...		Lus10027587 [exp]	1.4	0.9683
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Lus10016597 [exp]	3.9	0.9530
AT3G63460		EMB2221	transducin family protein / WD...		Lus10016373 [exp]	3.9	0.9395
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Lus10026726 [exp]	4.9	0.9487
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Lus10030776 [exp]	4.9	0.9413
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10024912 [exp]	6.0	0.9366
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028092 [exp]	6.6	0.9544
AT4G24610			unknown protein		Lus10000766 [exp]	6.7	0.9462
AT2G45540			WD-40 repeat family protein / ...		Lus10015857 [exp]	7.1	0.9552

Compare expression of checked genes

Lus10013101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.