Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53980 104 / 7e-28 HD ATHB52 homeobox protein 52 (.1) AT1G69780 89 / 6e-21 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT4G36740 88 / 6e-21 HD HB-5, ATHB40 homeobox protein 40 (.1) AT2G18550 86 / 4e-20 HD HB-2, ATHB21 homeobox-2, homeobox protein 21 (.1) AT3G01470 86 / 1e-19 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT5G15150 86 / 2e-19 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) AT5G65310 84 / 5e-19 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT3G01220 83 / 1e-18 HD ATHB20 homeobox protein 20 (.1) AT4G40060 83 / 1e-18 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT2G22430 80 / 1e-17 HD ATHB6 homeobox protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003492 [exp] 325 / 1e-113 AT5G53980 110 / 9e-31 homeobox protein 52 (.1) Lus10030493 [exp] 89 / 9e-21 AT1G69780 288 / 1e-97 Homeobox-leucine zipper protein family (.1) Lus10012845 [exp] 89 / 9e-21 AT1G69780 280 / 1e-94 Homeobox-leucine zipper protein family (.1) Lus10008795 [exp] 89 / 1e-20 AT3G01470 261 / 3e-87 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10037200 [exp] 87 / 5e-20 AT1G69780 319 / 2e-109 Homeobox-leucine zipper protein family (.1) Lus10036730 [exp] 87 / 5e-20 AT1G69780 325 / 9e-112 Homeobox-leucine zipper protein family (.1) Lus10022225 [exp] 85 / 3e-19 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10042180 [exp] 85 / 3e-19 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10041719 [exp] 83 / 6e-19 AT4G36740 192 / 9e-62 homeobox protein 40 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G114500 [exp] 134 / 2e-39 AT5G53980 113 / 2e-32 homeobox protein 52 (.1) Potri.001G395100 [exp] 123 / 5e-35 AT5G53980 114 / 6e-33 homeobox protein 52 (.1) Potri.017G016900 [exp] 98 / 2e-25 AT5G53980 80 / 3e-19 homeobox protein 52 (.1) Potri.007G135100 [exp] 93 / 3e-23 AT5G53980 85 / 3e-21 homeobox protein 52 (.1) Potri.008G148200 [exp] 92 / 8e-22 AT1G69780 333 / 6e-115 Homeobox-leucine zipper protein family (.1) Potri.007G029500 [exp] 86 / 1e-20 AT4G36740 208 / 2e-68 homeobox protein 40 (.1) Potri.015G065400 [exp] 86 / 1e-19 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.017G081700 [exp] 86 / 1e-19 AT5G15150 248 / 5e-81 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.012G070900 [exp] 86 / 1e-19 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.010G093400 [exp] 84 / 8e-19 AT1G69780 308 / 5e-105 Homeobox-leucine zipper protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10013103 pacid=23149295 polypeptide=Lus10013103 locus=Lus10013103.g ID=Lus10013103.BGIv1.0 annot-version=v1.0 ATGAACATGAATCCATCCAATAACAACAGGTTTAATCTCAACCCACAAAGTGGGAAGTCAGCAATAATAATGGATTTTCATGAAACCCAACAACAGCAGA AGCAGCAGCAGCAGATGAAGCGGCCACAAAAGAAGAGGCTGACGCAAGAGCAAGTGAGGGTGTTGGAGAGAAGTTTCAGCTTCAACAAGAAGCTGTTTCC GGAGCTCAAATCCGAGCTGGCGAGCCAGCTAGGGGTGCCGCCAAGACAGGTGGCAATATGGTATCAGAACAAGCGAGCTAGGTGGAAGACCCAGACTCTG GAGCTAGACCACAACACCTTGGAACTCAAGCTTCAGAATGCGGCGGTCAACAAACGGCGGCTAGAGAAGGAGGTGGCTCGGCTCCATCATGAGCTCAGCA AGGCTCAGGATACGGTTGTTGCTTCCGTGAACCACTGCCGCCATGGGGGATGTACTACTTCTAGTACTATACCTCCTGCTAATTTATTGGATCATCATCA TCTTCCTCCTGCTCCTATAACTATTCCTGCTCCCTCTGATGTTGATCAACATTATGATGATGCATGTCCTCCCATGAAAATGAATCCTTGCGGCTCTTCC TCTGACATCAACTTTAACAATATTCATGGACGTCGTGAGGAGGTTAATTTGCAGCTTGAGGATGAGCTTTATGCTTCTTTCGTCATGGGAGGTAATAGCG GGAGTAGTGGATCCACCTGCAGCTGGGATTAG
AA sequence Show only first row Show all	>Lus10013103 pacid=23149295 polypeptide=Lus10013103 locus=Lus10013103.g ID=Lus10013103.BGIv1.0 annot-version=v1.0 MNMNPSNNNRFNLNPQSGKSAIIMDFHETQQQQKQQQQMKRPQKKRLTQEQVRVLERSFSFNKKLFPELKSELASQLGVPPRQVAIWYQNKRARWKTQTL ELDHNTLELKLQNAAVNKRRLEKEVARLHHELSKAQDTVVASVNHCRHGGCTTSSTIPPANLLDHHHLPPAPITIPAPSDVDQHYDDACPPMKMNPCGSS SDINFNNIHGRREEVNLQLEDELYASFVMGGNSGSSGSTCSWD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Lus10013103 [exp]	0	1
AT1G18400	bHLH	bHLH044, BEE1	BR enhanced expression 1 (.1)		Lus10017602 [exp]	11.9	0.9664
AT1G75880		EXL1	SGNH hydrolase-type esterase s...		Lus10034541 [exp]	16.5	0.9655
AT1G18400	bHLH	bHLH044, BEE1	BR enhanced expression 1 (.1)		Lus10033562 [exp]	23.0	0.9613
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10002191 [exp]	23.2	0.9576
AT3G21720		ICL	isocitrate lyase (.1)		Lus10015122 [exp]	30.1	0.9564
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10030923 [exp]	32.1	0.9564
AT3G52720		CAH1, ATACA1, A...	A. THALIANA ALPHA CARBONIC ANH...		Lus10022710 [exp]	35.5	0.9558
AT3G09790		UBQ8	ubiquitin 8 (.1)		Lus10022258 [exp]	37.6	0.9557
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10004556 [exp]	41.1	0.9557
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013924 [exp]	41.5	0.9513

Compare expression of checked genes

Lus10013103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.