Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15090 311 / 2e-106 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT1G23740 56 / 5e-09 AOR alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT4G21580 50 / 4e-07 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) AT3G56460 41 / 0.0003 GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003495 [exp] 399 / 2e-141 AT3G15090 528 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10027904 [exp] 49 / 1e-06 AT1G49670 954 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Lus10018450 [exp] 48 / 2e-06 AT4G21580 503 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Lus10011233 [exp] 48 / 2e-06 AT4G21580 502 / 1e-180 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Lus10002406 [exp] 48 / 3e-06 AT1G49670 948 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Lus10003158 [exp] 44 / 3e-05 AT4G13010 473 / 4e-168 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10009658 [exp] 43 / 7e-05 AT5G61510 403 / 5e-142 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10002347 [exp] 43 / 0.0001 AT4G13010 468 / 8e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10009018 [exp] 41 / 0.0004 AT5G61510 513 / 1e-178 GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G373200 [exp] 335 / 4e-116 AT3G15090 515 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.004G233800 [exp] 46 / 8e-06 AT5G61510 527 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.004G036100 [exp] 45 / 1e-05 AT4G21580 525 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Potri.001G140600 [exp] 45 / 2e-05 AT5G61510 542 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.009G103000 [exp] 42 / 0.0002 AT1G49670 943 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Potri.001G342800 [exp] 41 / 0.0003 AT4G13010 513 / 0.0 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.019G065700 [exp] 41 / 0.0004 AT3G56460 525 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10013104 pacid=23149285 polypeptide=Lus10013104 locus=Lus10013104.g ID=Lus10013104.BGIv1.0 annot-version=v1.0 ATGGGTACAAGTGCGATTCCTTTTGCTGCACTGACAGCGTGGCGTGCGCTAAAGAGTACAGCCAGAATAGCTGAAGGGCAAAGGATATTAGTAGTTGGTG GAGGTGGTGCAGTCGGTTTTGCAGCCATCCAGCTTGGTATCGCTGCAGGATGCCATGTTACAACTACTTGTGGTTGTGAAAGTGTAAAGCGAATGATTGA AGCTGGTGTTGAACAGGCTGTTGACTACACTTCTGAGGACATTGAACTAGCCATCAAAGGGAAGTTCGATGTTGTTCTGGACACTATTGGAATGCCAGAA ACAGAAAGAATAGGTATCAACTTTCTGAAGAGAGGTGGACACTATATGACACTTCAGGGTGAGGCAGCAGCGTTGACGGATAGATATGGGCTGATAGTTG GGTTTCCCATAGCTACTTCAATTCTATTGAAGAAACAGATTCAATACCGTTATTCTCATGGCATAGAGTATTGGTGGACGTACATGAGAGCCGATTCTGA TGGTTTAGCTGAGATACGTAGGCTGTCTGAAGCGGGGAAGCTGAAACAGCCGGTGGAGAAGACATTCCCTTTTGCACAAGTTAAAGAGGCTCATGAAGCA AAAGACACTAGAAAGATAACCGGTAAAGTGGTACTGGAACTTGACTGA
AA sequence Show only first row Show all	>Lus10013104 pacid=23149285 polypeptide=Lus10013104 locus=Lus10013104.g ID=Lus10013104.BGIv1.0 annot-version=v1.0 MGTSAIPFAALTAWRALKSTARIAEGQRILVVGGGGAVGFAAIQLGIAAGCHVTTTCGCESVKRMIEAGVEQAVDYTSEDIELAIKGKFDVVLDTIGMPE TERIGINFLKRGGHYMTLQGEAAALTDRYGLIVGFPIATSILLKKQIQYRYSHGIEYWWTYMRADSDGLAEIRRLSEAGKLKQPVEKTFPFAQVKEAHEA KDTRKITGKVVLELD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15090			GroES-like zinc-binding alcoho...		Lus10013104 [exp]	0	1
AT2G18030			Peptide methionine sulfoxide r...		Lus10028467 [exp]	4.9	0.8216
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10000036 [exp]	9.6	0.8326
AT5G49690			UDP-Glycosyltransferase superf...		Lus10008955 [exp]	10.0	0.8308
AT4G03230			S-locus lectin protein kinase ...		Lus10031592 [exp]	16.0	0.8275
AT1G61770			Chaperone DnaJ-domain superfam...		Lus10020062 [exp]	17.3	0.7854
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10019364 [exp]	20.6	0.8099
AT1G60783			unknown protein		Lus10004622 [exp]	20.6	0.8200
AT5G05180			unknown protein		Lus10034251 [exp]	22.0	0.8176
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10000690 [exp]	23.7	0.7701
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10019774 [exp]	27.6	0.8111

Compare expression of checked genes

Lus10013104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.