Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028821 [exp] 129 / 3e-37 AT3G01360 289 / 5e-97 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2) Lus10006584 [exp] 49 / 2e-07 ND / Lus10005027 [exp] 48 / 3e-07 ND / Lus10001855 [exp] 41 / 2e-05 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G122800 [exp] 77 / 2e-17 AT3G01360 240 / 1e-77 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013105 pacid=23149301 polypeptide=Lus10013105 locus=Lus10013105.g ID=Lus10013105.BGIv1.0 annot-version=v1.0 ATGTACGCAGCGGTTTGCATCTTCTCCTTCCTTTTCATCGCCGACTCTCTCGTTTCCCTATTCAACGCCGTTGACTCCGACGACGGTATCGGCTCCGCCC TCCAGTTAAAGATTCTCTCCATCGCTGCCGTTTTCTTCTTCTACTCCGTCCTCGGTCTGGCCACGAGCCTCTCCTTAACCCCGATTCGTTTCCCTACGAA GCTCCTCGATTTGATCCTCCTCTTCGGTTTCCTCGAAGAATCCTTGCTCTATTGCAGCGATTTACAGAGAAATAGAGGAATGAGGATTGCGATTTTGTAC ACAGAGAGATGTTTCTTTTTTTTAAAAAAAATGCGGCGACACCGCCTTTTCCGACTCGGCGCCGCGGAGGCGCTCTCGGCGACAATTCGGCGACGATTCG GCGACGATCAGTCCGCCTCGCACTAA
AA sequence Show only first row Show all	>Lus10013105 pacid=23149301 polypeptide=Lus10013105 locus=Lus10013105.g ID=Lus10013105.BGIv1.0 annot-version=v1.0 MYAAVCIFSFLFIADSLVSLFNAVDSDDGIGSALQLKILSIAAVFFFYSVLGLATSLSLTPIRFPTKLLDLILLFGFLEESLLYCSDLQRNRGMRIAILY TERCFFFLKKMRRHRLFRLGAAEALSATIRRRFGDDQSASH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01360			Family of unknown function (DU...		Lus10013105 [exp]	0	1
AT4G35130			Tetratricopeptide repeat (TPR)...		Lus10003233 [exp]	7.7	0.7818
AT2G27590			S-adenosyl-L-methionine-depend...		Lus10020593 [exp]	11.9	0.7251
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10015474 [exp]	25.0	0.7114
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10024690 [exp]	31.2	0.6954
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10020764 [exp]	52.6	0.6991
					Lus10010602 [exp]	55.3	0.6091
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Lus10016031 [exp]	72.9	0.6825
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10037387 [exp]	75.2	0.6727
					Lus10039498 [exp]	84.9	0.6776
AT1G78840			F-box/RNI-like/FBD-like domain...		Lus10008295 [exp]	85.7	0.6655

Compare expression of checked genes

Lus10013105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.