Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15090 184 / 2e-57 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT1G23740 57 / 4e-10 AOR alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT4G21580 45 / 6e-06 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003495 [exp] 269 / 8e-91 AT3G15090 528 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10030873 [exp] 65 / 1e-12 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10030615 [exp] 65 / 1e-12 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10038206 [exp] 46 / 3e-06 AT4G13010 451 / 3e-160 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10002346 [exp] 45 / 4e-06 AT4G13010 265 / 3e-89 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10018450 [exp] 45 / 9e-06 AT4G21580 503 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Lus10011233 [exp] 45 / 9e-06 AT4G21580 502 / 1e-180 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Lus10003159 [exp] 44 / 3e-05 AT4G13010 449 / 4e-158 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10025898 [exp] 42 / 0.0001 AT4G13010 446 / 1e-158 Oxidoreductase, zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G373200 [exp] 200 / 6e-64 AT3G15090 515 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.016G136100 [exp] 66 / 5e-13 AT1G23740 504 / 9e-180 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.008G161600 [exp] 53 / 2e-08 AT1G23740 408 / 1e-142 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G140600 [exp] 40 / 0.0003 AT5G61510 542 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.001G452600 [exp] 40 / 0.0004 AT4G13010 469 / 1e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.004G036100 [exp] 39 / 0.0006 AT4G21580 525 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10013106 pacid=23149300 polypeptide=Lus10013106 locus=Lus10013106.g ID=Lus10013106.BGIv1.0 annot-version=v1.0 ATGCGACTTTTGAGCACTCGGTTCGGTTCAAGACACGGGGCTGCCACCCAATTCTTGAATTCGCGTTTGTGCAGGCACATTGTTACCAGCTGCAGGGCTG TGATATTGCCACGGTTCGGTGGCCCAGAGGTGCTGGAGATCCGTGACAGTGTCGATTTGCCGCCGCTGAAATCCAATGAGGTCCTGGTTCGTGCTCTGGC AGTTTCGGTCAATCCACTGGATACCAGAATGCGAGCAGGTTATGGTCGTTCAGTATTTGAACCACTTCTTCCACTGATCTTGGGTCGAGATGTTAGTGGT GAAGTTGCCGCTGTTGGATCATCAGTCCGGTCACTAAGTGTGGGCCAAGAAGTTTTTGGTGCTCTGCATCCAACTGCAGTCAGGGGTACTTACACGGACT ACGCTGTGCTTTCAGAAGAAGAACTTGCTGAAAAACCAGCATCTCTTACACATGTGGTATGTGCTGCGGTTTTTAGATTCCAGTTTGCAATTATGTGGTA A
AA sequence Show only first row Show all	>Lus10013106 pacid=23149300 polypeptide=Lus10013106 locus=Lus10013106.g ID=Lus10013106.BGIv1.0 annot-version=v1.0 MRLLSTRFGSRHGAATQFLNSRLCRHIVTSCRAVILPRFGGPEVLEIRDSVDLPPLKSNEVLVRALAVSVNPLDTRMRAGYGRSVFEPLLPLILGRDVSG EVAAVGSSVRSLSVGQEVFGALHPTAVRGTYTDYAVLSEEELAEKPASLTHVVCAAVFRFQFAIMW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15090			GroES-like zinc-binding alcoho...		Lus10013106 [exp]	0	1
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10006196 [exp]	5.5	0.7981
AT1G04910			O-fucosyltransferase family pr...		Lus10017105 [exp]	6.9	0.8163
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Lus10014769 [exp]	7.1	0.8476
AT2G30160			Mitochondrial substrate carrie...		Lus10042258 [exp]	8.7	0.8225
AT1G58025			DNA-binding bromodomain-contai...		Lus10035797 [exp]	8.7	0.7304
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10035727 [exp]	10.5	0.7838
AT2G40860			protein kinase family protein ...		Lus10002993 [exp]	11.8	0.7935
AT3G05675			BTB/POZ domain-containing prot...		Lus10033220 [exp]	15.5	0.8077
AT5G40880			WD-40 repeat family protein / ...		Lus10014612 [exp]	19.8	0.7808
AT5G07370		ATIPK2A, IPK2a	inositol polyphosphate kinase ...		Lus10009397 [exp]	21.2	0.7733

Compare expression of checked genes

Lus10013106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.