Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20410 381 / 4e-134 GAMMA-SNAP, GSNAP gamma-soluble NSF attachment protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008061 [exp] 515 / 0 AT4G20410 433 / 2e-154 gamma-soluble NSF attachment protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G155200 [exp] 423 / 2e-150 AT4G20410 383 / 9e-135 gamma-soluble NSF attachment protein (.1) Potri.001G440600 [exp] 422 / 6e-150 AT4G20410 375 / 2e-131 gamma-soluble NSF attachment protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013109 pacid=23149280 polypeptide=Lus10013109 locus=Lus10013109.g ID=Lus10013109.BGIv1.0 annot-version=v1.0 ATGTCTTCTTCTGATCCCGACAAGCTCGTTGCCAAGGCTGATAAACTAACAAAGCTTACCCTTACACGGTGGAGTGCTGATTGGAGAAACGCCACTATTT TCTACGAGCAAGCTGGAAATGCGTATAGAGTAGCTAAGAAGTATGAAAAGGCAAAAGCAGCATTTGAAAAGGCTTCCAAAGGGCAAGAGATGCTTTCCTC TCCCTGGGATGCTGCTAAGCATATAGAATCTGCTGCTGCTCTAGCGAAAGAGGTAGGTAACTGGAGCCAAGTAGCTGATTTGTACAGAAGGGCATCAGAG TTGTACATTGAGTGTGGGAGGTCACAACCTGCATCAGATGCACTAGGGAAGGCAGCTCGTGCCGTGGAAGATCATTTGCCTGATGTTGCTCTTCAGCTGT ATACTGATGCTTGTGAAATTCTGGAAGAGGATGACAAGGAACAAATGGCCTTTGATCTATACCGTGCTCTAACTGCTGTTCACATTAAGCTTGAAAAGTA TACGGATGCTGCAGCTTCCTTGTTGAGACTGGGTCTTGCAGCTGACAAATGTAATGCTACAAACAGCCAGTGCAAGGCATACCTTGGTGCTATTGTAGTA TACCTGTATGCTAATGATGTCAAGGCGGCGGGGAAATGCTATAATGACTGCTCACAGATTGCTGCCTTCTTGGGAAGTGACCAAGGCCGATGTGCTAGTA AGCTTCTTTCAGCTTATTCTGAAGGTGACGTTGAAGAGATCAAACGTGTAGCCCAGTCTAGCACCATGTCCCATCTTGACCACGTTATAATCAAGCTGGG ACGAAGGCTACCTACTGGGGATGTGACGGCAACAAAAGCTGATAGTGAAGAGGGAGAAGCCTTGGACGAGAATGATCTCACATAA
AA sequence Show only first row Show all	>Lus10013109 pacid=23149280 polypeptide=Lus10013109 locus=Lus10013109.g ID=Lus10013109.BGIv1.0 annot-version=v1.0 MSSSDPDKLVAKADKLTKLTLTRWSADWRNATIFYEQAGNAYRVAKKYEKAKAAFEKASKGQEMLSSPWDAAKHIESAAALAKEVGNWSQVADLYRRASE LYIECGRSQPASDALGKAARAVEDHLPDVALQLYTDACEILEEDDKEQMAFDLYRALTAVHIKLEKYTDAAASLLRLGLAADKCNATNSQCKAYLGAIVV YLYANDVKAAGKCYNDCSQIAAFLGSDQGRCASKLLSAYSEGDVEEIKRVAQSSTMSHLDHVIIKLGRRLPTGDVTATKADSEEGEALDENDLT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20410		GAMMA-SNAP, GSN...	gamma-soluble NSF attachment p...		Lus10013109 [exp]	0	1
					Lus10040920 [exp]	13.3	0.8066
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10009067 [exp]	24.3	0.7996
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10031022 [exp]	36.4	0.7716
AT2G16860			GCIP-interacting family protei...		Lus10027466 [exp]	67.5	0.7616
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Lus10010899 [exp]	75.7	0.7659
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10000225 [exp]	81.4	0.7667
AT5G05670			signal recognition particle bi...		Lus10030593 [exp]	90.9	0.7005
AT2G18465			Chaperone DnaJ-domain superfam...		Lus10020871 [exp]	110.2	0.7308
AT3G30390			Transmembrane amino acid trans...		Lus10034353 [exp]	112.4	0.7389
AT3G25570			Adenosylmethionine decarboxyla...		Lus10000156 [exp]	131.5	0.7264

Compare expression of checked genes

Lus10013109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.