Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32420 251 / 1e-71 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3.4) AT3G63400 207 / 1e-59 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT2G21130 172 / 2e-49 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G34870 169 / 2e-48 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT4G38740 167 / 6e-48 ROC1 rotamase CYP 1 (.1) AT2G15790 172 / 3e-47 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) AT3G55920 163 / 1e-45 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G56070 160 / 2e-45 ROC2 rotamase cyclophilin 2 (.1.2) AT2G29960 159 / 2e-44 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT2G16600 157 / 3e-44 ROC3 rotamase CYP 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008079 [exp] 355 / 2e-109 AT4G32420 263 / 2e-75 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3.4) Lus10024831 [exp] 205 / 4e-56 AT3G63400 308 / 8e-99 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10018746 [exp] 199 / 6e-54 AT3G63400 306 / 4e-98 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10022012 [exp] 173 / 8e-50 AT3G56070 295 / 1e-103 rotamase cyclophilin 2 (.1.2) Lus10042553 [exp] 171 / 4e-49 AT3G56070 297 / 1e-104 rotamase cyclophilin 2 (.1.2) Lus10020992 [exp] 177 / 5e-49 AT2G15790 598 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10018238 [exp] 169 / 7e-48 AT2G29960 348 / 4e-124 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10040666 [exp] 169 / 8e-48 AT5G58710 347 / 2e-123 rotamase CYP 7 (.1) Lus10023860 [exp] 173 / 2e-47 AT2G15790 599 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G030300 [exp] 278 / 2e-81 AT4G32420 284 / 3e-83 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3.4) Potri.006G250900 [exp] 276 / 2e-80 AT4G32420 283 / 5e-83 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3.4) Potri.002G047200 [exp] 214 / 3e-59 AT3G63400 229 / 1e-66 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.005G215800 [exp] 206 / 1e-56 AT3G63400 252 / 2e-77 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.004G144300 [exp] 183 / 6e-51 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.009G106200 [exp] 174 / 5e-48 AT2G15790 561 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.002G021500 [exp] 167 / 8e-48 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.009G130100 [exp] 167 / 8e-48 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G135500 [exp] 174 / 9e-48 AT2G15790 553 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.007G040100 [exp] 173 / 1e-47 AT2G15790 551 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10013111 pacid=23164125 polypeptide=Lus10013111 locus=Lus10013111.g ID=Lus10013111.BGIv1.0 annot-version=v1.0 ATGGCAAAGATGAAGAATCCGGTGGTTTTTATGGATGTATCTATTGATGGAGATCCATCTGAGAGAATGGTTTTTGAGCTTTTCAATGATGTCGTTCCGA AGACTGCAGAAAATTTCCGTGCTCTTTGCACAGGAGAAAAAGGAATTGGGCCAAGAACTGGAAAACCTTTGCACTTCAAGGGCTCGTTCTTCCATCGTGT CATTAAAGGCTCTATGGTTCAGGGAGGCGACTTCTCTAAGAGAGATGGCACTGATGGAGAGAGCATATATGGTGATAAGTTTCCCGATGAGTCTCCAAGA CTAAAGCATGATGAGCCAGGTCTTCTGTCCATGCCAACTGCTGTTCGTGATACCTTAGGGTCTCAGTTCATTATCACTTTTGGGGCTAATCAAAGTCTGG ACAGGAAGTACGTAGTGTTTGGGAAGCTTGTCAAAGGGTTAAATGTTCTCAAGAAAATTGAAGGTGTAGGAGATGAAGAAGGGAAGCCAACGGTGATAGT GAAAGTAATCAATTGTGGTGAACTTGATGATAAGAAGCAATTGAAACATAAGGCAGGAAAGGATGTATCACCTAACGCTAGTACCTTGGAAACAAAAAAG AAAGGGAAACACAAAAGATCTTCAAGGAACAGGAAGAAAAGGAGAAGAAGACACCATTCATCGGATTCTGATAGTTCATCTGATTCTGAGTTGGAGTCGT CTGAGTCTGACAGTGATACCGACTCAGATTTATCATCAGCTGAACTTAGCTCTTCCAGTGATGATAAACGGAAGAAGAGGAAAAGATTATCGAATAGAGA CAGATATAGACGTGGGAAAAGAAGAGATAAACGTCGCGAAAGAAGGCGGAAAAGACACGACAAGAAGTCTAAACATAGATCAAGAAGGGATTCGGATAGT CTTTCAGAAGATTCCAGCACTAGCGGGACTGATGGTTCCTCTGGTGATGACAGCTTTGATATGCAAGCAAAAGAGCAAAAGCGTAAAGACCGAGAAAAGA AAACTGGTGCAGATCCCTCTTCTGTTGTATCTGAAAGAGAGGCTGCTGAATCTTCACTTGTTCGTAAGAGGAATCCTGATACCATGAAGGAAAATGGCGA ATCTCTCAATCAAAATGGAGTGAGGCAGGGCAAAGGTGCTTATTTGGACACGATATCTGATAGAAGCAGGGACCGGCAACCTGATGTGGTCGATGACCAC CCCGGAAAATCTAGGAGTCGGAGCCGGAGCATGAGTATCAGTCCAAGAAAAACTCTTAGCAGCAGGAGTCCCAGCATTAGTCCAAACAAGAGCTTGAGCA GGAGCCCCAGTGTTAGCCGAAGCCTCCTACCAAGGAGTCCCAGCAGAAGTCCGGCGAGAAGTATCAGCCGCAGCCCGGTGAGGGGGAAAAGTGTCAAGAG TATTAGCAACAGCCCTGCTAAAAGTGTGAGCAGGAGTCCATCAGTAAGAAGAAATGCTAGAAGCATTAGCAAGAGCCCAGCTAGGAGCCTGAGCAGGAGT ATTAGTAAGAGCCCGGCTAGGAGCATCAGTAGGAGCCCTGTCAGAAGCAAAAAAGCTAGAAGCATAACCAAGAGCCCTGTACGATCTCGTTCGAGAAGAA CTGTTAGCAGAAGCCCAGTTAGGCCACGCTCTCGAAGAAATATCAGCAGGAGCCCGGTGAGGTCTCGGTCTCGAAGAAGCAACAGCCAGAGCCCCGCGAG AGGCCCTGCTCAGAGAAGCTTGGGCAGGAATTCTGTAAGTAGAAGCCCTGTTAGATCTACTAGGAGAAGTATGAGCAGAAGCTCTGGAGGGTGGCCTCCT TCTAGGAGGAGCATTAGCAGAAGTCCTGTGAAGGCACCGATCAGGAGTCGTCGTCGGAGTTACTCAAGGAGCCATAGCCCTGTAAGGAGGAGGAACAGAT CTCCTGATCGTAGAAGTTCGTCGAGAAGTTTGTCTCCAGATGGATCTCCTAAGCGGATTAGGAGAGGGCGGGGATTCAGTCAGAGGTACTCTTATGCTCG ACGGTACCGAACTCCTTCTCCGGATCGCTCGCCTGTGAGGTCTTATCGTTATGGTGGAAGAAACGATCGTGACAGATATTCCAGTTATAGGAGGTACTCA CCTAGGCGTTTCAGAAGCCCTCCAAGAGGAAGAACTCCTCCAAGATTTAGAGGCAGGAGAAGCAGAACAAGAAGTCCTTCTGTGACAAGGAGGAGCCCCC GGTACAGAAGCCGTAGGTACAGCAGGAGTCGAAGCCCCATTCGTAGCCGGAGTCATTCTCCGATTGATTCAAGGTCTCGGACATCTCCACGCGCCACGAA GCTAAGGTCACCTTCAAGGAGCCCAAGCCCAAGCCGCAGTCCCAGCCAGAGCCCTGCAGATTCGAGGTCTTCGCTCGGTTCGCAGTCTCCGGAAAAGGAC CGATCAAGGTCGTCATCGGGAAGCCCGAGTGGGAAGAAGGGCTTGGTTTCTTACGACGATGCTTCTCCATAG
AA sequence Show only first row Show all	>Lus10013111 pacid=23164125 polypeptide=Lus10013111 locus=Lus10013111.g ID=Lus10013111.BGIv1.0 annot-version=v1.0 MAKMKNPVVFMDVSIDGDPSERMVFELFNDVVPKTAENFRALCTGEKGIGPRTGKPLHFKGSFFHRVIKGSMVQGGDFSKRDGTDGESIYGDKFPDESPR LKHDEPGLLSMPTAVRDTLGSQFIITFGANQSLDRKYVVFGKLVKGLNVLKKIEGVGDEEGKPTVIVKVINCGELDDKKQLKHKAGKDVSPNASTLETKK KGKHKRSSRNRKKRRRRHHSSDSDSSSDSELESSESDSDTDSDLSSAELSSSSDDKRKKRKRLSNRDRYRRGKRRDKRRERRRKRHDKKSKHRSRRDSDS LSEDSSTSGTDGSSGDDSFDMQAKEQKRKDREKKTGADPSSVVSEREAAESSLVRKRNPDTMKENGESLNQNGVRQGKGAYLDTISDRSRDRQPDVVDDH PGKSRSRSRSMSISPRKTLSSRSPSISPNKSLSRSPSVSRSLLPRSPSRSPARSISRSPVRGKSVKSISNSPAKSVSRSPSVRRNARSISKSPARSLSRS ISKSPARSISRSPVRSKKARSITKSPVRSRSRRTVSRSPVRPRSRRNISRSPVRSRSRRSNSQSPARGPAQRSLGRNSVSRSPVRSTRRSMSRSSGGWPP SRRSISRSPVKAPIRSRRRSYSRSHSPVRRRNRSPDRRSSSRSLSPDGSPKRIRRGRGFSQRYSYARRYRTPSPDRSPVRSYRYGGRNDRDRYSSYRRYS PRRFRSPPRGRTPPRFRGRRSRTRSPSVTRRSPRYRSRRYSRSRSPIRSRSHSPIDSRSRTSPRATKLRSPSRSPSPSRSPSQSPADSRSSLGSQSPEKD RSRSSSGSPSGKKGLVSYDDASP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10013111 [exp]	0	1
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Lus10022874 [exp]	2.0	0.8474
					Lus10000429 [exp]	2.2	0.8205
AT2G47210	MYB		myb-like transcription factor ...		Lus10021650 [exp]	4.0	0.7931
AT5G22120			unknown protein		Lus10004788 [exp]	4.2	0.8060
AT1G19485			Transducin/WD40 repeat-like su...		Lus10018573 [exp]	4.5	0.8269
					Lus10036951 [exp]	4.5	0.7844
AT1G33420			RING/FYVE/PHD zinc finger supe...		Lus10013775 [exp]	5.5	0.8057
AT3G58560			DNAse I-like superfamily prote...		Lus10012293 [exp]	6.3	0.8431
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10024026 [exp]	8.1	0.8364
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10037787 [exp]	8.4	0.7955

Compare expression of checked genes

Lus10013111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.