Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11420 597 / 0 Protein of unknown function, DUF642 (.1) AT5G25460 595 / 0 Protein of unknown function, DUF642 (.1) AT4G32460 582 / 0 Protein of unknown function, DUF642 (.1.2) AT1G80240 484 / 3e-172 Protein of unknown function, DUF642 (.1) AT3G08030 414 / 2e-144 Protein of unknown function, DUF642 (.1.2) AT2G41800 398 / 4e-138 Protein of unknown function, DUF642 (.1) AT2G41810 394 / 1e-136 Protein of unknown function, DUF642 (.1) AT1G29980 352 / 2e-119 Protein of unknown function, DUF642 (.1.2) AT2G34510 350 / 7e-119 Protein of unknown function, DUF642 (.1) AT5G14150 147 / 1e-40 Protein of unknown function, DUF642 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008080 [exp] 733 / 0 AT5G11420 604 / 0.0 Protein of unknown function, DUF642 (.1) Lus10005474 [exp] 647 / 0 AT5G11420 581 / 0.0 Protein of unknown function, DUF642 (.1) Lus10025753 [exp] 444 / 7e-156 AT5G11420 453 / 8e-160 Protein of unknown function, DUF642 (.1) Lus10035910 [exp] 440 / 8e-154 AT5G11420 452 / 9e-159 Protein of unknown function, DUF642 (.1) Lus10029501 [exp] 435 / 9e-153 AT3G08030 537 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10039602 [exp] 434 / 4e-152 AT3G08030 530 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10016394 [exp] 395 / 1e-136 AT3G08030 469 / 2e-166 Protein of unknown function, DUF642 (.1.2) Lus10016393 [exp] 392 / 9e-136 AT3G08030 490 / 1e-174 Protein of unknown function, DUF642 (.1.2) Lus10029502 [exp] 390 / 8e-135 AT3G08030 475 / 1e-168 Protein of unknown function, DUF642 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G250100 [exp] 610 / 0 AT5G11420 598 / 0.0 Protein of unknown function, DUF642 (.1) Potri.018G031100 [exp] 606 / 0 AT5G11420 600 / 0.0 Protein of unknown function, DUF642 (.1) Potri.003G059800 [exp] 524 / 0 AT5G25460 513 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G174400 [exp] 510 / 0 AT5G25460 507 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G263900 [exp] 426 / 4e-149 AT3G08030 515 / 0.0 Protein of unknown function, DUF642 (.1.2) Potri.009G058800 [exp] 422 / 2e-147 AT3G08030 498 / 9e-178 Protein of unknown function, DUF642 (.1.2) Potri.006G050300 [exp] 412 / 6e-144 AT2G41810 530 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050400 [exp] 407 / 6e-142 AT2G41810 521 / 0.0 Protein of unknown function, DUF642 (.1) Potri.016G056100 [exp] 396 / 1e-137 AT2G41810 520 / 0.0 Protein of unknown function, DUF642 (.1) Potri.011G087500 [exp] 360 / 1e-122 AT1G29980 578 / 0.0 Protein of unknown function, DUF642 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF04862 [flax] [poplar] DUF642 Protein of unknown function (DUF642)
Representative CDS sequence Show only first row Show all	>Lus10013112 pacid=23164145 polypeptide=Lus10013112 locus=Lus10013112.g ID=Lus10013112.BGIv1.0 annot-version=v1.0 ATGGGTGGAAGTAGAGTTGGGTTCAAAACGACGACGTTTGCGGTGGCGCTGCTGCTTCTCGCCACCTGTCACTCTTGCGCCGCCATTAGAGACGGCCTGC TAAGGAACGGCAACTTCGAGCTAGGACCAAAGGCGACATCAATGAAGGGCACACAAGTAACAGGCCGCCTATCCCTCCCCGAGTGGGAGATCTCGGGGTT CGTTGAGTACATAAAATCGGGCCAGAAGCAAGGTGACATGCTCCTCGTGGTCCCCGAGGGAGCGTTTGCTGTGCGCCTGGGGAACGAGGCGTCCATCAAG CAGCGTGTGAAGGTGATCAAAGGAATGTACTATTCCCTCACCTTCAGCGCTGCTCGGACCTGCGCCCAGGAGGAGAAGCTCAACATCTCAGTGTCGCCTG ATTCGGGAGTGCTCCCGATGCAGACCATGTATAGTAGCAATGGTTGGGACTCGTACGCGTGGGCCTTTCAGGCTGAATATGGCTATGCTGAGATTGTGAT TCATAACCCTGGTGTTGAGGAGGACCCTGCTTGTGGACCGTTAATTGACTCTGTTGCTATTAGGGCTCTGTTCCCTCCTAGACCCACCAATAAGAATATA TTGAAAAACGGAGGATGGGAAGAAGGTCCGTACATCCTCCCAAACACATCGTGGGGAGTTCTGATCCCGCCGAACATCGAAGACGACCACTCCCCACTCC CCGGGTGGATGGTCGAGTCCCTCAAGGCCGTCAAATACATCGACTCCGACCACTTCTCCGTTCCCCAAGGACGCCGCGCCGTCGAGCTCGTCGCCGGCAA GGAGAGCGCCATCGCCCAGGTCGCCCGCACCGTCCCTGGAAAAACCTACACCCTCACCTTCGCCGTCGGCGACGCCAGCAACGCCTGCGCCGGTTCCATG CTCGTGGAGGCCTTCGCCGGTAAAGACACGCTCAAGGTCCCCTACACTTCCGGCGGGAAAGGCGGGTTCAAAAGGGCGGAGCTCCGGTTCGTCGCCACGT CGGCTAGGACACGTGTCATGTTCTACAGCTCGTTTTATCATATGAGGAGCGACGACTTTTCTTCGCTTTGTGGGCCCGTCGTTGACGACGTCAAGCTTCT GAGCGTCCGTAAACCCACGCGCCGCTTCTAG
AA sequence Show only first row Show all	>Lus10013112 pacid=23164145 polypeptide=Lus10013112 locus=Lus10013112.g ID=Lus10013112.BGIv1.0 annot-version=v1.0 MGGSRVGFKTTTFAVALLLLATCHSCAAIRDGLLRNGNFELGPKATSMKGTQVTGRLSLPEWEISGFVEYIKSGQKQGDMLLVVPEGAFAVRLGNEASIK QRVKVIKGMYYSLTFSAARTCAQEEKLNISVSPDSGVLPMQTMYSSNGWDSYAWAFQAEYGYAEIVIHNPGVEEDPACGPLIDSVAIRALFPPRPTNKNI LKNGGWEEGPYILPNTSWGVLIPPNIEDDHSPLPGWMVESLKAVKYIDSDHFSVPQGRRAVELVAGKESAIAQVARTVPGKTYTLTFAVGDASNACAGSM LVEAFAGKDTLKVPYTSGGKGGFKRAELRFVATSARTRVMFYSSFYHMRSDDFSSLCGPVVDDVKLLSVRKPTRRF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11420			Protein of unknown function, D...		Lus10013112 [exp]	0	1
AT5G18430			GDSL-like Lipase/Acylhydrolase...		Lus10004774 [exp]	2.0	0.8834
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031824 [exp]	3.9	0.8441
AT5G18050			SAUR-like auxin-responsive pro...		Lus10008994 [exp]	5.5	0.8673
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009624 [exp]	5.7	0.8603
AT4G38840			SAUR-like auxin-responsive pro...		Lus10010714 [exp]	8.7	0.8515
AT1G41830		SKS6	SKU5 SIMILAR 6, SKU5-similar 6...		Lus10025107 [exp]	10.2	0.8155
AT1G22640	MYB	AtMYB3	ARABIDOPSIS THALIANA MYB DOMA...		Lus10001043 [exp]	10.5	0.8085
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009000 [exp]	10.7	0.8352
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009627 [exp]	12.4	0.8195
AT5G11420			Protein of unknown function, D...		Lus10008080 [exp]	14.5	0.8081

Compare expression of checked genes

Lus10013112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.