Lus10013114 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G52605 44 / 3e-07 Defensin-like (DEFL) family protein (.1)
AT4G14276 44 / 7e-07 Defensin-like (DEFL) family protein (.1)
AT5G08315 41 / 4e-06 Defensin-like (DEFL) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033170 151 / 4e-49 AT5G52605 49 / 7e-09 Defensin-like (DEFL) family protein (.1)
Lus10031095 118 / 2e-36 AT5G52605 46 / 8e-08 Defensin-like (DEFL) family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G113600 50 / 1e-09 AT5G52605 76 / 8e-20 Defensin-like (DEFL) family protein (.1)
Potri.013G113550 50 / 1e-09 AT5G52605 67 / 3e-16 Defensin-like (DEFL) family protein (.1)
Potri.005G074350 50 / 2e-09 AT4G14276 66 / 1e-15 Defensin-like (DEFL) family protein (.1)
Potri.016G130300 47 / 2e-08 AT5G52605 64 / 3e-15 Defensin-like (DEFL) family protein (.1)
PFAM info
Representative CDS sequence
>Lus10013114 pacid=23164175 polypeptide=Lus10013114 locus=Lus10013114.g ID=Lus10013114.BGIv1.0 annot-version=v1.0
ATGGGAGGAGTGAAATTAGTCGCATTCATGGTGATGCTGGTCATGATGGGTGGCTGGTTGAGAGGAGAATGCAGCGGAGCCACTATTGACGCGGAGGCCG
CGGGGGTGGTGCAACCGATGGGAATATGTTGCAGAGAGTATTACAACAAGGGCCCGTGTGTGCCAGGGGTGGGAGACATTCCGGGTGGAAAGTGCCACGA
TTTTTGTATACAAGAGTGTAGGGGTGCACTTTGCAAGAAGACTTCCAAGGGTCATCACTGCCATTGCTTGTGCTGA
AA sequence
>Lus10013114 pacid=23164175 polypeptide=Lus10013114 locus=Lus10013114.g ID=Lus10013114.BGIv1.0 annot-version=v1.0
MGGVKLVAFMVMLVMMGGWLRGECSGATIDAEAAGVVQPMGICCREYYNKGPCVPGVGDIPGGKCHDFCIQECRGALCKKTSKGHHCHCLC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G52605 Defensin-like (DEFL) family pr... Lus10013114 0 1

Lus10013114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.