Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25600 1010 / 0 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT4G32500 989 / 0 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT2G26650 988 / 0 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT4G22200 549 / 0 AKT3, AKT2/3 potassium transport 2/3 (.1) AT4G18290 540 / 0 KAT2 potassium channel in Arabidopsis thaliana 2 (.1) AT5G46240 537 / 0 KAT1 potassium channel in Arabidopsis thaliana 1 (.1) AT4G32650 416 / 2e-135 AtLKT1, KAT3, ATKC1 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) AT5G37500 371 / 2e-115 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT3G02850 366 / 1e-113 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT2G23980 79 / 5e-15 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008082 [exp] 1563 / 0 AT2G25600 994 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10002529 [exp] 1199 / 0 AT2G25600 1030 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10043298 [exp] 1020 / 0 AT2G26650 1250 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10019442 [exp] 1018 / 0 AT2G26650 1252 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10033052 [exp] 992 / 0 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10042831 [exp] 560 / 0 AT5G46240 825 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Lus10019944 [exp] 559 / 0 AT4G22200 1111 / 0.0 potassium transport 2/3 (.1) Lus10028128 [exp] 551 / 0 AT5G46240 827 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Lus10017766 [exp] 550 / 0 AT2G26650 719 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G031600 [exp] 1150 / 0 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.006G249900 [exp] 1126 / 0 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.018G071400 [exp] 996 / 0 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.006G154600 [exp] 709 / 0 AT2G26650 816 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.004G132200 [exp] 571 / 0 AT5G46240 913 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Potri.003G018800 [exp] 566 / 0 AT4G22200 1045 / 0.0 potassium transport 2/3 (.1) Potri.006G245000 [exp] 455 / 6e-150 AT4G32650 752 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.018G035500 [exp] 434 / 9e-142 AT4G32650 777 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.012G124944 [exp] 415 / 1e-134 AT4G32650 734 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.004G083300 [exp] 358 / 2e-110 AT3G02850 1268 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein CL0030 [flax] [poplar] PF11834 [flax] [poplar] KHA KHA, dimerisation domain of potassium ion channel CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10013115 pacid=23164123 polypeptide=Lus10013115 locus=Lus10013115.g ID=Lus10013115.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAAAACAGGAAGAACAAGGTCATGTTCTCCGGCGACCACGATGACAGCGGACGATCTGGGGAAATGGCTCTCAACGAGAAGGAGATTGACT GTTACTCGGCTGACGACGGTAGCCATTTCAGCCTCACCGGCGACATCCTCCCTTCTCTCGGCGCCACACGCAGCATCCGCCGCGCTAGGCTCCGCCGATC CATCGTCTCCCCCTTCGATTCTCGCTACAGGAGCTGGGAGGTGTTCCTTGTGTTTCTGGTTTTCTACACGGCGTGGATGTCGCCGTTCGAATTCGGATTC GTGGCGCGTCCGAGCGGGGCTCTTGCGATCACCGATAACGTAGTGAATGCTCTCTTCTTCGTCGACATTGTGTTGACGTTCTTCGTCGCTTACCAAGACG ACACGACGTTTCTTCTTGTCGATTCCAAGCAGGAGATTGCTATGAGGTACATCAAGAGCTGGTTCTTCCTCGATCTCATCTCCACAATCCCCACCGAAGT TGTTCGTGCTATATTGCCAAATAGTCTTCAAGCATATGGTTACGTCAGTATGCTGCGCCTGTGGCGTATCCGACGAGTTAGTCAACTCTTCTCCAGATTG GAGAAAGATAAGAACTACAGTTATTTCTGGATTCGTTGCGCCAGGCTCATTTGTGTTACTCTTTTTGTTCTTCACCTGGCTGCCTGCTTCTTTTACCGTC TGGCTGCAAATTACTCTGATCCCAAGCAAACATGGATTGGATCAGTTCGGGAGAATTTTAAAGGGGATCCGTTGTCAGTTAGTTATGTGCAAGCAATGTA CTGGTCTATAACAACGTTTAGTACCACTGGATATGGTGATTTACATGCTGTAAATCCCGGTGAAATGGCGTTTGTAGTGTTATATATGGTGTTTAATCTC GGATTGTCTTCCTACTTGATTGGAAATATGACGAATTTGGTCGTCCATGGAGCAGCTCGGACCAGGCATTTCAGGGATACGATTCAAGCTGCCTCAAGTT TTTCACAGAGAAATCATCTACCTGTTCGGTTGGAAGATCAGATGATTGCCCATTTGAGTTTGAAGTACAGAACTGATTCCGAGGGACTACATCAGCAAGA GGCCATTGATTCCCTCCCTAAAGCCATTCGATCTAGTATTGCAAACTACCTATTTTACCCACTAATAGATAGGGTCTACTTATTTCGAGGAATTCCCCAT GACTTGCTTTTCCAATTGGTCTCAGAAATGAAGCCTGAGTACTTTCCTCCAAGAGAAGATGTGATCTTGCAGAATGAAGCTCCCACGGATATGTATTTTT TGGTCTCTGGGGCTGTTGTTGTTGATGAGGCAAGGACTGGCGACGTTGTTGGTGAGATTGGTGTGATATGTTACAGGCCACAAATGTTCACCGTTCGAAC CAAAAGACTCAGTCAGCTTCTTCGTTTGAACCGAACTGCATTTTTTAATCTCCTTCAAGCTAATGTTTCGGATGGGACTATAATCATGAACAATGTTCTT CAGCATTTGAAGGAAAGGAACGATCCACTGATGCAAGAAATCTTATCAGAGACGGAGCACATGCTTGCACAGGGGAAAACGGATTTGCCTCTTACTTTAT GTTTTGCAGCGACGAGAGGTGATGATCTATTGTTACTACACATACTGAAGCGTGGTTCGGACCCTGACGAGGCTGATGATGGCGGCCGGACCGCAATGCA TATTGCCGCTTCAAATGGGAATGAACACTGCGTAGCTTTACTTCTGGAATATGGAGCTGACCCCAATAGAAAAGATTCGGAAGGCCAGGTTCCGCTATGG GACGCACTCCTCGCCAATCACCAAAACGTGATCAAGCTACTATCCGACAACGGCGCCACATTATCTTCGGCTGACGTCGGCCAGTTTGCATTAAGAGCAG TGGAACAAAACGACCTGAACTTACTGAAGGAAATCGTTCAGTACGGTGGAGAAGTAACGACAACAAGCAGAGGCACCACAGCACTCCACTCGGCAGTATC GCAAGCGAACACCGGAATGGTTAAGTTTTTGTTGGACCAAGGATCCGACGTGGACATACCGGATGCCAACGGGTGGACGGCGAGGGCGTTGGCTGATCAT CAGGGCCATGAAGAGATCAAGCTTTTGATCCAGAATAGGAAACAGGTGAAGAAACCGGCAAAGGTGGAAACTTTTCAGACGGTTAGAGCGGGAAGTGCCG TTGGGAAGAAGGGGATGAAAAAGTACGCTAGTCAACCTTTGTCGGCTCCGACGGTGTTTGAACGGAGAAGATTCAATAATTTCAGTAATTCGCTGTTCGG GATGATGTCGGCTGCAAATTCAGGCGAGAGCGACATCCCAGGATCTGGCGGCGGCGGTGGCTTGCCGAGCTTCAGTAGCCCTCCGGAGAGAGTAACGGTA AGCTGTCCGGAGAGAGGCGATGTTACAGGGAAGGTGATGGTGCTGCCGAAGTCGCTTGAGGAGCTTGTCGAATTAGGAAGCAAGAAGTATGGTCTCAGGG CAACCAAGATACTGAACAAAGAAGGAGCCTTGATTGAGGATCTAGAGTTGGTAAGAGACGGGGACCATATCGTCCTCGCCAGCTGA
AA sequence Show only first row Show all	>Lus10013115 pacid=23164123 polypeptide=Lus10013115 locus=Lus10013115.g ID=Lus10013115.BGIv1.0 annot-version=v1.0 MGKKNRKNKVMFSGDHDDSGRSGEMALNEKEIDCYSADDGSHFSLTGDILPSLGATRSIRRARLRRSIVSPFDSRYRSWEVFLVFLVFYTAWMSPFEFGF VARPSGALAITDNVVNALFFVDIVLTFFVAYQDDTTFLLVDSKQEIAMRYIKSWFFLDLISTIPTEVVRAILPNSLQAYGYVSMLRLWRIRRVSQLFSRL EKDKNYSYFWIRCARLICVTLFVLHLAACFFYRLAANYSDPKQTWIGSVRENFKGDPLSVSYVQAMYWSITTFSTTGYGDLHAVNPGEMAFVVLYMVFNL GLSSYLIGNMTNLVVHGAARTRHFRDTIQAASSFSQRNHLPVRLEDQMIAHLSLKYRTDSEGLHQQEAIDSLPKAIRSSIANYLFYPLIDRVYLFRGIPH DLLFQLVSEMKPEYFPPREDVILQNEAPTDMYFLVSGAVVVDEARTGDVVGEIGVICYRPQMFTVRTKRLSQLLRLNRTAFFNLLQANVSDGTIIMNNVL QHLKERNDPLMQEILSETEHMLAQGKTDLPLTLCFAATRGDDLLLLHILKRGSDPDEADDGGRTAMHIAASNGNEHCVALLLEYGADPNRKDSEGQVPLW DALLANHQNVIKLLSDNGATLSSADVGQFALRAVEQNDLNLLKEIVQYGGEVTTTSRGTTALHSAVSQANTGMVKFLLDQGSDVDIPDANGWTARALADH QGHEEIKLLIQNRKQVKKPAKVETFQTVRAGSAVGKKGMKKYASQPLSAPTVFERRRFNNFSNSLFGMMSAANSGESDIPGSGGGGGLPSFSSPPERVTV SCPERGDVTGKVMVLPKSLEELVELGSKKYGLRATKILNKEGALIEDLELVRDGDHIVLAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25600		AKT6, SPIK	Shaker pollen inward K+ channe...		Lus10013115 [exp]	0	1
AT5G27970			ARM repeat superfamily protein...		Lus10004115 [exp]	5.5	0.8366
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Lus10006491 [exp]	6.2	0.8108
AT1G16650			S-adenosyl-L-methionine-depend...		Lus10013723 [exp]	6.4	0.8384
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10027507 [exp]	9.5	0.8140
AT2G25600		AKT6, SPIK	Shaker pollen inward K+ channe...		Lus10008082 [exp]	12.0	0.8124
AT5G16720			Protein of unknown function, D...		Lus10002289 [exp]	13.6	0.8257
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10008947 [exp]	19.9	0.7939
AT5G15270			RNA-binding KH domain-containi...		Lus10033557 [exp]	20.2	0.8283
AT2G48060			unknown protein		Lus10029973 [exp]	22.8	0.7824
AT5G40640			unknown protein		Lus10014575 [exp]	23.0	0.8199

Compare expression of checked genes

Lus10013115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.