Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11380 910 / 0 DXPS3 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) AT4G15560 716 / 0 AtCLA1, DXS, DXPS2, DEF, CLA1 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) AT3G21500 593 / 0 DXPS1 1-deoxy-D-xylulose 5-phosphate synthase 1 (.1.2) AT5G50850 63 / 3e-10 MAB1 MACCI-BOU, Transketolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008084 [exp] 1375 / 0 AT5G11380 960 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Lus10012789 [exp] 706 / 0 AT4G15560 1229 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10002663 [exp] 687 / 0 AT4G15560 1026 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10012724 [exp] 686 / 0 AT4G15560 1030 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10001322 [exp] 678 / 0 AT4G15560 1021 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10006984 [exp] 676 / 0 AT4G15560 1023 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10019991 [exp] 676 / 0 AT4G15560 1018 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10015517 [exp] 676 / 0 AT4G15560 1020 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10033987 [exp] 647 / 0 AT4G15560 1134 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G249700 [exp] 1036 / 0 AT5G11380 949 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Potri.018G031800 [exp] 1022 / 0 AT5G11380 958 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Potri.010G015200 [exp] 716 / 0 AT4G15560 1227 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.008G196500 [exp] 714 / 0 AT4G15560 1207 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.006G171700 [exp] 676 / 0 AT4G15560 1037 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.007G058500 [exp] 676 / 0 AT4G15560 999 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.001G061400 [exp] 69 / 3e-12 AT5G50850 640 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.003G166400 [exp] 67 / 1e-11 AT5G50850 636 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.004G129800 [exp] 45 / 0.0002 AT2G34590 634 / 0.0 Transketolase family protein (.1) Potri.017G076500 [exp] 42 / 0.001 AT2G34590 671 / 0.0 Transketolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02779 [flax] [poplar] Transket_pyr Transketolase, pyrimidine binding domain CL0591 [flax] [poplar] TKC_like PF02780 [flax] [poplar] Transketolase_C Transketolase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10013117 pacid=23164133 polypeptide=Lus10013117 locus=Lus10013117.g ID=Lus10013117.BGIv1.0 annot-version=v1.0 ATGGGTACTGCTGTTGCTCAGTACCCAAACGGAATCGCGTCGCATTCATGTGGGAATTCCGCTCTGAAGTTGGGTTCCAGATGCTGTTCCTTCTCCAAGC TCCCTTGTCGATTGGATGATAATAAAGTCTCTAGCTTTGGCGGCCTTCGTCAAGGGAGCTCTGCTTCTTCCAGTAACTCCATGGGATTCACTACTCGGTT ATATGCTATACCAGATATAGACGATATGTTTTGGGACAAAGTACCGACTCCGATTCTTGATATGGTGGAGAATCCTATTCACCTCAAGAATTTGACCCTC AAGGAACTGAAAGAACTGGCTCAAGAAATACGGTCAGAATTGTCTTCTTTAATGTCACAACGACCGAATTCTTTGAAGGCCAGTTTGGCTGTGGTGGAAC TTACCATTGCCATGCACCATGTTTTTCATGCTCCGGTCGACAAGATACTGTGGGATGCCGGAGAACAAACCTATGCGCATAAACTTCTTACAGGAAGGAG GTCACTAATGCAAAAGCTGAAACAAAAGAACGGTCTTTCTGGATTTACATCTCGATCCGAGAGTGAATATGATCCGTTCGGAACTGGGCATGGGTGCAAT AGTGTTTCTGCTGGTCTCGGAATGGCGATTGCACGTGATTTCAAAGGGAAGCGCGATCGAGTCGTAACTGTCATCAGCAATGCCACGACTCTGGCTGGTC AAGCCTATGAAGCAATGAGTAATGCTGGTTATTTGGACTCGAATATGATTGTGATTTTGAATGATAGCCGTCGCTCTTTACTTCCGAAGATCGAACAAGG GCCGAAAACTTCAATCACTGCCTTGTCTAGTACCTTGAGCAAGATCCAGTCTAGTAAATCGTTCCGGAAGTTTAGAGAAGTTGCAAAGGGGCTAACGAAA AAGATCGGTAAGGGTATGTATGAGCTGGCTGCCAAAGTCGATGAGTACGCGCGTGGTATGGTGGGTCCACAAGGATCGACTCTTTTCGAAGAGCTTGGGA TGTACTATATCGGTCCTGTTGATGGTAACAACATAGAAGACCTGATTTGTGTTCTGCAAGAAGTCGGATCTCTTGACTCCATGGGCCCCGTCTTGATACA CGTGATCACAGAAGACAATCATCAAGTTGAATGTAACGAACAGACCGAGGCAGAAGACCTGCAGGAAGGTTATGGATCGATTTCTTCCCCATCTAATGTT CACACTCGAACGTACAGCGATTGCTTTGTAGATTCTTTGCTTCTAGAGACGGAGAAACACAAAGATATCGTGATTGTTCATGCCGGTATCGAAATGGAAC CCGCTTTTCACTTGCTTCAGGAAACCTTTGGTGACAAGTTTTTCGACGTCGGTATGGCTGAGCAACATGCTGTTACATTCTCCGCCGGTTTATCTTGTGG CGGATTAAGGCCATTTTGCATCATTCCTTCTACTTTTCTGCAGAGAGCGTATGATCAGATCGTCCACGATGTGGATCGGCAGAAGATCCCGGTCCGCTTT GTCATTACAAGTGCAGGATTGGTGGGGAATTCCGGTCCCATGTATAACGGCGCATTTGATGTCACATTCATGTCGTGCTTACCGAATATGATCGTAATGG CTCCTTCGGACGAGGATGAGTTGGTCAACATGGTGGCTACCGCAGCCCAGATCGACGATCGACCGGTTTGCTTCCGCTATCCTAGAGGCGCCATCGTCAG AACAGACCATTTCATGCGTTCTGGGATTCCCCTTAAGATTGGCAAAGGAAGAGTTCTGATAGAAGGTAAAGACGTGGCATTGCTCGGGTACGGAGCCATG GTCCAGAACTGCCTCAAAGCACAAGCCCTCCTGTCGAAGCTTGGAATCGAAGTAACCGTTGCAGATGCAAGATTCTGCAAGCCCCTCGATACCGAGCTTC TCAGCCTGTTATGTGAAAACCATCAGTTCCTAATAACGGTCGAGGAAGGTTCCATCGGAGGGTTCGCTTCCCACGTGGCGCAGTTCATAGCTCTCAACGG CCATCTCGATGCATCCATTAAGTGGCGGCCGATTGTTTTACCAGACAGCTACGTCGAGAACGCATTGCCAGAAGAACAGCTAGCTCGAGCCGGGTTGAGT GGGAACCATATAGCTGCAACTGTGCTGAGATTGCTGGGAAGAGCAAGGGAAGCTGTCCTTTTGATGTGCTAA
AA sequence Show only first row Show all	>Lus10013117 pacid=23164133 polypeptide=Lus10013117 locus=Lus10013117.g ID=Lus10013117.BGIv1.0 annot-version=v1.0 MGTAVAQYPNGIASHSCGNSALKLGSRCCSFSKLPCRLDDNKVSSFGGLRQGSSASSSNSMGFTTRLYAIPDIDDMFWDKVPTPILDMVENPIHLKNLTL KELKELAQEIRSELSSLMSQRPNSLKASLAVVELTIAMHHVFHAPVDKILWDAGEQTYAHKLLTGRRSLMQKLKQKNGLSGFTSRSESEYDPFGTGHGCN SVSAGLGMAIARDFKGKRDRVVTVISNATTLAGQAYEAMSNAGYLDSNMIVILNDSRRSLLPKIEQGPKTSITALSSTLSKIQSSKSFRKFREVAKGLTK KIGKGMYELAAKVDEYARGMVGPQGSTLFEELGMYYIGPVDGNNIEDLICVLQEVGSLDSMGPVLIHVITEDNHQVECNEQTEAEDLQEGYGSISSPSNV HTRTYSDCFVDSLLLETEKHKDIVIVHAGIEMEPAFHLLQETFGDKFFDVGMAEQHAVTFSAGLSCGGLRPFCIIPSTFLQRAYDQIVHDVDRQKIPVRF VITSAGLVGNSGPMYNGAFDVTFMSCLPNMIVMAPSDEDELVNMVATAAQIDDRPVCFRYPRGAIVRTDHFMRSGIPLKIGKGRVLIEGKDVALLGYGAM VQNCLKAQALLSKLGIEVTVADARFCKPLDTELLSLLCENHQFLITVEEGSIGGFASHVAQFIALNGHLDASIKWRPIVLPDSYVENALPEEQLARAGLS GNHIAATVLRLLGRAREAVLLMC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11380		DXPS3	1-deoxy-D-xylulose 5-phosphate...		Lus10013117 [exp]	0	1
AT3G14830			unknown protein		Lus10041938 [exp]	3.5	0.9373
AT5G59960			unknown protein		Lus10004947 [exp]	3.9	0.9279
AT4G32190			Myosin heavy chain-related pro...		Lus10006190 [exp]	4.9	0.9323
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Lus10032154 [exp]	7.5	0.9222
AT3G29270			RING/U-box superfamily protein...		Lus10005220 [exp]	7.7	0.9269
AT5G11380		DXPS3	1-deoxy-D-xylulose 5-phosphate...		Lus10008084 [exp]	8.7	0.8997
AT1G13570			F-box/RNI-like superfamily pro...		Lus10030920 [exp]	9.8	0.9241
AT5G14120			Major facilitator superfamily ...		Lus10025123 [exp]	10.2	0.9252
AT1G28260			Telomerase activating protein ...		Lus10014007 [exp]	11.4	0.9162
AT3G45300		IVDH, ATIVD, IV...	isovaleryl-CoA-dehydrogenase (...		Lus10036122 [exp]	13.6	0.9176

Compare expression of checked genes

Lus10013117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.