Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30380 67 / 3e-15 EXLB2 Barwin-related endoglucanase (.1) AT2G18660 61 / 1e-12 AtPNP-A, PNP-A, EXLB3 plant natriuretic peptide A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019444 [exp] 151 / 8e-48 AT2G18660 68 / 3e-15 plant natriuretic peptide A (.1) Lus10033054 [exp] 146 / 7e-46 AT2G18660 56 / 1e-10 plant natriuretic peptide A (.1) Lus10030078 [exp] 100 / 3e-27 AT2G18660 84 / 3e-21 plant natriuretic peptide A (.1) Lus10017763 [exp] 85 / 2e-22 ND 35 / 0.001 Lus10042435 [exp] 74 / 2e-17 AT4G30380 101 / 2e-28 Barwin-related endoglucanase (.1) Lus10008085 [exp] 65 / 1e-14 ND / Lus10019978 [exp] 63 / 3e-13 AT4G30380 162 / 8e-53 Barwin-related endoglucanase (.1) Lus10026232 [exp] 60 / 7e-12 AT4G30380 90 / 2e-23 Barwin-related endoglucanase (.1) Lus10020130 [exp] 57 / 1e-10 AT2G18660 70 / 2e-15 plant natriuretic peptide A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G031901 [exp] 166 / 8e-54 AT4G30380 57 / 3e-11 Barwin-related endoglucanase (.1) Potri.006G249500 [exp] 164 / 3e-53 AT4G30380 61 / 1e-12 Barwin-related endoglucanase (.1) Potri.006G155000 [exp] 145 / 2e-45 AT2G18660 59 / 1e-11 plant natriuretic peptide A (.1) Potri.018G029100 [exp] 101 / 2e-28 AT2G18660 94 / 2e-25 plant natriuretic peptide A (.1) Potri.006G252200 [exp] 100 / 7e-28 AT2G18660 91 / 2e-24 plant natriuretic peptide A (.1) Potri.018G098200 [exp] 81 / 4e-20 AT4G30380 122 / 5e-37 Barwin-related endoglucanase (.1) Potri.003G218300 [exp] 73 / 3e-17 AT4G30380 86 / 2e-22 Barwin-related endoglucanase (.1) Potri.006G176300 [exp] 66 / 1e-14 AT4G30380 165 / 6e-54 Barwin-related endoglucanase (.1) Potri.006G179300 [exp] 58 / 2e-11 AT2G18660 116 / 1e-34 plant natriuretic peptide A (.1) Potri.018G101600 [exp] 57 / 5e-11 AT2G18660 113 / 3e-33 plant natriuretic peptide A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10013118 pacid=23164144 polypeptide=Lus10013118 locus=Lus10013118.g ID=Lus10013118.BGIv1.0 annot-version=v1.0 ATGGCGCCGCCGACGACATCTATACGTTTCTTCACCTTCTTCTTGGCCGCCGCTGCCGTCGGATTCTTCCGACAATGCTCCGCCGACATAGGCACAGCTT CCCACTACAGCGTCCCATACCTACCGACGGCGTGCTACGGAGGAGATAGGACGCAGTTCCCGACGAGCAACCTCTTCGCGGCGGCGGGAGAAGGAGTATG GGACAACGGGGCGTCCTGTGGGCGGCAGTACATGGTGAGGTGCATCAGTGCGGTGGCTCCGAGAACCTGCATTCCCGGAGCCACCGTCAGGGTGAGGATC GTCGACCGAGCTCAATCATCCGTCACTCGGCCGTCAAGAACAGGCACGACTTTGGTCCTGTCCACCTCCGCTTTTGCCGCCATTGCCAACGGTTCTCCCG GCGCCATCAACATTGACTTTCAACAGTAA
AA sequence Show only first row Show all	>Lus10013118 pacid=23164144 polypeptide=Lus10013118 locus=Lus10013118.g ID=Lus10013118.BGIv1.0 annot-version=v1.0 MAPPTTSIRFFTFFLAAAAVGFFRQCSADIGTASHYSVPYLPTACYGGDRTQFPTSNLFAAAGEGVWDNGASCGRQYMVRCISAVAPRTCIPGATVRVRI VDRAQSSVTRPSRTGTTLVLSTSAFAAIANGSPGAINIDFQQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10013118 [exp]	0	1
AT4G00910			Aluminium activated malate tra...		Lus10001528 [exp]	1.7	0.9382
AT4G00910			Aluminium activated malate tra...		Lus10033223 [exp]	2.8	0.8911
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10013316 [exp]	4.2	0.8836
					Lus10038978 [exp]	4.6	0.9104
AT3G58060			Cation efflux family protein (...		Lus10029300 [exp]	5.7	0.8306
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10012953 [exp]	5.9	0.8834
AT1G47710			Serine protease inhibitor (SER...		Lus10019009 [exp]	7.5	0.9134
AT4G10265			Wound-responsive family protei...		Lus10031613 [exp]	9.2	0.8899
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10020550 [exp]	21.2	0.8579
AT1G26380			FAD-binding Berberine family p...		Lus10023374 [exp]	22.1	0.7359

Compare expression of checked genes

Lus10013118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.