Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11350 498 / 8e-167 DNAse I-like superfamily protein (.1) AT3G18500 222 / 6e-65 DNAse I-like superfamily protein (.1.2.3) AT1G73875 197 / 1e-55 DNAse I-like superfamily protein (.1) AT3G58580 100 / 1e-21 DNAse I-like superfamily protein (.1) AT3G58560 100 / 1e-21 DNAse I-like superfamily protein (.1) AT1G31500 93 / 4e-20 DNAse I-like superfamily protein (.1.2.3.4) AT1G02270 62 / 6e-10 Calcium-binding endonuclease/exonuclease/phosphatase family (.1) AT5G54130 53 / 4e-07 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) AT1G31530 45 / 0.0001 DNAse I-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008086 [exp] 1151 / 0 AT5G11350 526 / 9e-178 DNAse I-like superfamily protein (.1) Lus10032490 [exp] 204 / 8e-58 AT1G73875 446 / 3e-154 DNAse I-like superfamily protein (.1) Lus10036357 [exp] 195 / 5e-55 AT3G18500 422 / 2e-145 DNAse I-like superfamily protein (.1.2.3) Lus10014775 [exp] 192 / 8e-54 AT3G18500 423 / 7e-146 DNAse I-like superfamily protein (.1.2.3) Lus10015981 [exp] 103 / 1e-22 AT3G58580 872 / 0.0 DNAse I-like superfamily protein (.1) Lus10012293 [exp] 103 / 1e-22 AT3G58560 949 / 0.0 DNAse I-like superfamily protein (.1) Lus10016206 [exp] 101 / 4e-22 AT3G58560 944 / 0.0 DNAse I-like superfamily protein (.1) Lus10029338 [exp] 100 / 8e-22 AT3G58560 945 / 0.0 DNAse I-like superfamily protein (.1) Lus10026203 [exp] 77 / 6e-15 AT1G31500 458 / 2e-162 DNAse I-like superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G032300 [exp] 399 / 5e-128 AT5G11350 560 / 0.0 DNAse I-like superfamily protein (.1) Potri.012G057100 [exp] 199 / 3e-56 AT1G73875 502 / 2e-176 DNAse I-like superfamily protein (.1) Potri.016G061700 [exp] 99 / 3e-21 AT3G58560 926 / 0.0 DNAse I-like superfamily protein (.1) Potri.006G195600 [exp] 98 / 4e-21 AT3G58560 904 / 0.0 DNAse I-like superfamily protein (.1) Potri.003G106000 [exp] 82 / 2e-16 AT1G31500 457 / 1e-160 DNAse I-like superfamily protein (.1.2.3.4) Potri.012G007600 [exp] 56 / 8e-08 AT5G54130 721 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.015G004200 [exp] 56 / 1e-07 AT5G54130 719 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.014G108200 [exp] 50 / 3e-06 AT5G54130 620 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.002G182500 [exp] 44 / 0.0003 AT5G54130 600 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10013119 pacid=23164136 polypeptide=Lus10013119 locus=Lus10013119.g ID=Lus10013119.BGIv1.0 annot-version=v1.0 ATGAAGCGATCTGCTGCTGCACCTCCACTACAACTCCTCGCCACCATAGCCGCCGGAGACACCACCACCGCCATGTCTTCTCGCATTCCGCACCGCGGCG GCGGTAGAAGGCCTTGGGGAAGAGGAGGCTTCTCAGGCCGCCATTACAGAGGCGGAAGAGACCCACCACAGTTCTTCCCCGGCGACTCACAGCTCCCTCC TGCTCACCACCAGGACGCCGATTTAGGGTTCACACAAGGACGGCAAGGCAGTTCCAATCCGTGGCGGCCGCTGGAGTTCCAGCAGCCGCGTCCACACTAT TACCAGAATCAGCATCAGTTCCGACACCCACCTCCGTTTGTTCAGAATCAGCACCATCAGCATTTCCAGCAGGCTCCGGCGTTTGATCGTAATCATGGTT TCCGACCACCGCATCGGCCGCCTATGCAGCAGCTACCGAAAGAATTGATTTTTAGGAATTGGGAGTATGCCAATGTTCCTCCTCCTCCTAATGCAGAAAG GTTTAGTGTTCTTTCTTATAATATACTCGCCGACTATCTGGCGATCAACCACAGGAGCAAACTTTACTTTCACATACCTCATCATATGCTGTCTTGGCAA TGGAGGAAGAGAAGCATAATCTTTGAGCTTGGCTTGTGGAAAGCTGATATTCTGTGCTTTCAGGAGGTTGACAGATTTCAGGAGTTGGAAAATGACTTGA ATCCATCAGGATACAGTGGCATATATCAGATGCGGACAGGCACTGCCACTGATGGATGTGCCATCTTTTGGAGAACTTCAAAATTCAACTTGGTTCATGA AGAATCTATCGTGTTCAATAACTTTGGACTTCGAGATAACGTTGCTCAGATATGTGTGCTGGAGTCAACAACTCAAAGCTCGAACTCTGATGCATCGACT CAGTCTGCAAGCGCAGCTGGTTCTAATAATGTGGTCGTATGCAACATTCATGTGCTGTACAATCCTAGGAGAGGTGAAATTAAGATTGGTCAGGTGAGAA AACTTCTCGATAGGGCCCATGCTGCTTCAAAACTGTGGAATGATGCTCCAGTTGTTCTCTGTGGTGACTTTAATTGCACCCCAAAGAGTCCATTGTACAA CTTCATCTCTGAACAGAAGTTAGATCTGTTAGAAGTAGATAGAGATAAGGTATCTGGACAGGCCTCTGCTGAAATACGACCTCCAAGGATGAACTACCCT GGTTCAAAACCCAATCCTAGTTCTTTCCCTCGGTATCGTTCGCCAAATAATCCAGGTCAAGTTCAATTTACAGTAGATAGCAAGCTAGATACTCATTTTG CAGATCTCCTGAAAAATAATGATGACCGAGCGATGGGAGAAGGCAGTCCTTCGAGTAATGATGCATTTTCTGGTATCATACCGGATCCAAGTGGTCCTTC ATCGGAATCGGAATCTGTTTCTAATAGGACGATGTTTCAAAGTTCTGAATCAAGTACTTCCATAGGAGATACGTGCAGGAACTTCAAGGATCTATCCATC TCCCACGAAGTATCCTGTTCTGGGAGAAGAGGATTTCATTCTTCACGGCCAGATATCAATACTGAAAACCTCGGCTCTTCTGAACATAAAGTTTTAAGTG GTGAAGATGAAAGCAGTTTCTTAGATGCACTACACGGAACAAACTATACTTTCTCTCAAACTGCAAGCTCGGATATGGATCAATCCAGGAAAGACTTCGG TATGGGTCCAAATGGCTCTCAAGTGCCCCCGCTAACAGATGAAATCACTAATGATTCTTCCCAGAGCCAGGACTTTGAGGTTGTCGACGAGAATAATATA TATGATCCATCAGTCTGGACGCCGATGGAAATAGCTACTGCTACAGGAGATGCAGACTGCATCCGTTTACAGCATCCTCTAACTCTAAGAAGTGCTTACG CAACGGTTGAGGACCGTTCAGGGACGAGAGATTCCCATGGAGAGCCCGAGGCCACGAGCTATAACAGGCATTTCTTGGGCACAGTTGACTATATATGGTT TTCGAAAGGCCTCCAGGCTGTCGGCGTACTTGCTCCTATACCGAAACGTGCCATGCAGTGGACTTCCGGGTTCCCAACGAAGAAATGGGGGAGTGACCAT ATCGCGTTGGCATCGGAGTTCGCCTTCACTCCGATCGAGGCGAACCCAGAAATGGATCATCCATGA
AA sequence Show only first row Show all	>Lus10013119 pacid=23164136 polypeptide=Lus10013119 locus=Lus10013119.g ID=Lus10013119.BGIv1.0 annot-version=v1.0 MKRSAAAPPLQLLATIAAGDTTTAMSSRIPHRGGGRRPWGRGGFSGRHYRGGRDPPQFFPGDSQLPPAHHQDADLGFTQGRQGSSNPWRPLEFQQPRPHY YQNQHQFRHPPPFVQNQHHQHFQQAPAFDRNHGFRPPHRPPMQQLPKELIFRNWEYANVPPPPNAERFSVLSYNILADYLAINHRSKLYFHIPHHMLSWQ WRKRSIIFELGLWKADILCFQEVDRFQELENDLNPSGYSGIYQMRTGTATDGCAIFWRTSKFNLVHEESIVFNNFGLRDNVAQICVLESTTQSSNSDAST QSASAAGSNNVVVCNIHVLYNPRRGEIKIGQVRKLLDRAHAASKLWNDAPVVLCGDFNCTPKSPLYNFISEQKLDLLEVDRDKVSGQASAEIRPPRMNYP GSKPNPSSFPRYRSPNNPGQVQFTVDSKLDTHFADLLKNNDDRAMGEGSPSSNDAFSGIIPDPSGPSSESESVSNRTMFQSSESSTSIGDTCRNFKDLSI SHEVSCSGRRGFHSSRPDINTENLGSSEHKVLSGEDESSFLDALHGTNYTFSQTASSDMDQSRKDFGMGPNGSQVPPLTDEITNDSSQSQDFEVVDENNI YDPSVWTPMEIATATGDADCIRLQHPLTLRSAYATVEDRSGTRDSHGEPEATSYNRHFLGTVDYIWFSKGLQAVGVLAPIPKRAMQWTSGFPTKKWGSDH IALASEFAFTPIEANPEMDHP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11350			DNAse I-like superfamily prote...		Lus10013119 [exp]	0	1
AT1G77270			unknown protein		Lus10038311 [exp]	3.2	0.9030
AT5G01620		TBL35	TRICHOME BIREFRINGENCE-LIKE 35...		Lus10002858 [exp]	3.7	0.8873
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10016423 [exp]	5.1	0.8664
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10014915 [exp]	9.6	0.9002
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Lus10032267 [exp]	10.5	0.8813
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10010642 [exp]	12.4	0.8950
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10016367 [exp]	14.5	0.8880
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10018975 [exp]	15.7	0.8899
AT3G26782			Tetratricopeptide repeat (TPR)...		Lus10031989 [exp]	16.1	0.8716
AT5G14620		DMT7, DRM2	domains rearranged methyltrans...		Lus10032136 [exp]	18.7	0.8329

Compare expression of checked genes

Lus10013119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.