Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11340 256 / 1e-88 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT5G16800 64 / 9e-13 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) AT3G02980 57 / 4e-10 MCC1 MEIOTIC CONTROL OF CROSSOVERS1 (.1) AT5G13780 51 / 3e-08 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G38130 48 / 4e-07 ATMAK3 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) AT1G03650 42 / 2e-05 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008088 [exp] 305 / 2e-107 AT5G11340 249 / 2e-85 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10013457 [exp] 64 / 1e-12 AT5G16800 337 / 1e-117 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10041016 [exp] 62 / 6e-12 AT5G16800 334 / 1e-116 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10041514 [exp] 51 / 4e-08 AT2G38130 287 / 3e-100 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10012579 [exp] 49 / 2e-07 AT2G38130 286 / 7e-100 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10025567 [exp] 45 / 5e-06 AT1G03650 233 / 8e-80 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10021559 [exp] 42 / 0.0001 AT2G06025 244 / 2e-80 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G032400 [exp] 281 / 1e-98 AT5G11340 270 / 4e-94 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.006G248900 [exp] 277 / 4e-97 AT5G11340 280 / 3e-98 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.019G050700 [exp] 70 / 7e-15 AT5G16800 334 / 2e-116 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.013G079900 [exp] 69 / 1e-14 AT5G16800 346 / 3e-121 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.001G432400 [exp] 52 / 9e-09 AT2G38130 296 / 4e-104 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.001G429200 [exp] 52 / 9e-09 AT2G38130 299 / 6e-105 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.001G435300 [exp] 52 / 9e-09 AT2G38130 299 / 6e-105 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.011G139300 [exp] 52 / 2e-08 AT2G38130 294 / 1e-102 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.009G056600 [exp] 52 / 2e-08 AT5G13780 307 / 5e-108 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.013G134102 [exp] 49 / 1e-07 AT1G03650 242 / 2e-83 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10013120 pacid=23164155 polypeptide=Lus10013120 locus=Lus10013120.g ID=Lus10013120.BGIv1.0 annot-version=v1.0 ATGGGGATTGATAGTAAGCAAGTCTCGATATCTTTGGATGGAGTGCGGGAGAAGAACATGATGCAGCTCAAGAAGCTCAACACCGTCCTCTTCCCCGTTC GTTACAACGACAAGTACTACTCCGACGCCCTCGCTTCTTCCGACTTCACCAAACTCGCTTATTACAGCGACATCTGCGTCGGAGCCATTGCATGCCGCCT GGAGAAGAAGGAAGGCGGGGCTGTCTGTGTTTACATCATGACTCTGGGCGTGCTAGCACCTTATCGCGAGTTAGGCATTGGGACGAGACTGTTGAACCAC GTACTGGGTCTCTGCCAGAAGCAGAACAACATCCCCGAGATATACTTGCACGTGCAGACGAACAACAAAGATGCCATCAACTTCTACAAGAAGTTTGGGT TCGAGATCACAGACACCATCCAGAATTACTACACCAACATTACGCCACCAGATTGCTACGTTGTTAAGAAATTCATTACTGAGACTGAGAAATGA
AA sequence Show only first row Show all	>Lus10013120 pacid=23164155 polypeptide=Lus10013120 locus=Lus10013120.g ID=Lus10013120.BGIv1.0 annot-version=v1.0 MGIDSKQVSISLDGVREKNMMQLKKLNTVLFPVRYNDKYYSDALASSDFTKLAYYSDICVGAIACRLEKKEGGAVCVYIMTLGVLAPYRELGIGTRLLNH VLGLCQKQNNIPEIYLHVQTNNKDAINFYKKFGFEITDTIQNYYTNITPPDCYVVKKFITETEK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11340			Acyl-CoA N-acyltransferases (N...		Lus10013120 [exp]	0	1
AT5G11340			Acyl-CoA N-acyltransferases (N...		Lus10008088 [exp]	1.0	0.8775
AT2G39170			unknown protein		Lus10040608 [exp]	3.5	0.8557
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10001819 [exp]	4.2	0.8600
AT4G18975			Pentatricopeptide repeat (PPR)...		Lus10028526 [exp]	4.5	0.8715
AT4G01790			Ribosomal protein L7Ae/L30e/S1...		Lus10007191 [exp]	5.9	0.8317
AT3G61860		ATRSP31, At-RS3...	arginine/serine-rich splicing ...		Lus10005986 [exp]	7.1	0.8122
AT1G64810		APO1	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10039122 [exp]	11.3	0.8200
AT1G50670			OTU-like cysteine protease fam...		Lus10021522 [exp]	12.4	0.8045
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10025128 [exp]	12.7	0.8164
AT2G35795			Chaperone DnaJ-domain superfam...		Lus10015065 [exp]	14.0	0.7439

Compare expression of checked genes

Lus10013120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.