Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11330 350 / 2e-120 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT5G67030 41 / 0.0007 NPQ2, LOS6, IBS3, ATZEP, ATABA1, ABA1 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008089 [exp] 422 / 3e-148 AT5G11330 483 / 1e-170 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) Lus10009359 [exp] 44 / 0.0001 AT5G67030 888 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Lus10019342 [exp] 44 / 0.0002 AT5G67030 852 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G032500 [exp] 359 / 4e-123 AT5G11330 568 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) Potri.006G248800 [exp] 245 / 5e-79 AT5G11330 427 / 4e-149 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) Potri.007G044300 [exp] 46 / 3e-05 AT5G67030 919 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Potri.005G138400 [exp] 44 / 0.0001 AT5G67030 925 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01266 [flax] [poplar] DAO FAD dependent oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10013121 pacid=23164124 polypeptide=Lus10013121 locus=Lus10013121.g ID=Lus10013121.BGIv1.0 annot-version=v1.0 ATGGCGCCGAAGGCAATCATTGTTGGCGGGAGCATCGCCGGAATATGCTGCGCCCACTCCCTCCTCCTCGCCGGCTGGCAAGTTACCGTCATCGAGAAAT CCTCTTCTCCCCCAACTGAAAGCTCCACCGGCGCTGGCCTCTGCCTCGACCCTCAATCACGCGCCATCATCTCCACCTGGCTATCTCATCCCCACCTCCT CCACCGCTCCACCTTCCCTCTATCCATCGACCAGAACCAGTTGACCGACGCAGAAACCAAATCCACGCGGGTACTTACCAGAGACGAACAGTTCGATTTC AGAGCCGCTCACTGGGCCAATCTCCACCGCCTCCTTTACACTTCTTTACCGCCGGATAATCCCGCTTTGTTTCTGTGGGGCCATCTTTACCAATCCTTCT CCGTTTCTAAAAAGGACAACAGATCATCCGTCTGTGTCCAATCCAAAGTCCTCCAAACTGGAGAAATCGTCGAGATAACTGGAGATTTGCTTGTGGCTGC AGATGGGTGTCTCTCCGCCGTTCGCCGGACTTTCCTTCCTGATTTGGATTTAAGGTATTCAGGCTACTGTGCGTGGAGAGGGGTGCTTGATTTCTCAGGA AATGAAGATTCAGAAACCATTACAGACATTCGAAGAGCATATCCTGATCTGGGGAAGTGCTTGTATTTTGATCTAAGCAGTGAAGGAACTCACAGTGTGT TCTACGAACTTCTCAACAGTCGGCTTAACTGGATTTGGTATGTCCATCACCCCAATCCCGATCTCAAGGGGAGTAGTAGCACTTCAGTGACCATGAAAGT AAGCAGGGAGATGACTGAAGACGTACAAGAAAGCAGAGAAAGTATGGCCACCCGAGCTGATCCGAGTCATGAAAGAGACCAAAGAACCGTTTCTAAACCT AATCTACGACTCCGATCCACTCGATCAAATCAAAGAGGCTAA
AA sequence Show only first row Show all	>Lus10013121 pacid=23164124 polypeptide=Lus10013121 locus=Lus10013121.g ID=Lus10013121.BGIv1.0 annot-version=v1.0 MAPKAIIVGGSIAGICCAHSLLLAGWQVTVIEKSSSPPTESSTGAGLCLDPQSRAIISTWLSHPHLLHRSTFPLSIDQNQLTDAETKSTRVLTRDEQFDF RAAHWANLHRLLYTSLPPDNPALFLWGHLYQSFSVSKKDNRSSVCVQSKVLQTGEIVEITGDLLVAADGCLSAVRRTFLPDLDLRYSGYCAWRGVLDFSG NEDSETITDIRRAYPDLGKCLYFDLSSEGTHSVFYELLNSRLNWIWYVHHPNPDLKGSSSTSVTMKVSREMTEDVQESRESMATRADPSHERDQRTVSKP NLRLRSTRSNQRG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Lus10013121 [exp]	0	1
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Lus10013122 [exp]	1.4	0.9357
AT2G28060			5'-AMP-activated protein kinas...		Lus10008427 [exp]	3.0	0.9042
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10000954 [exp]	4.0	0.9018
AT1G60200			splicing factor PWI domain-con...		Lus10030866 [exp]	4.1	0.8855
AT3G49200			O-acyltransferase (WSD1-like) ...		Lus10019840 [exp]	6.9	0.8983
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10041649 [exp]	8.2	0.9090
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10039456 [exp]	8.4	0.8934
					Lus10007298 [exp]	8.5	0.8810
AT1G10320	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10010687 [exp]	9.3	0.8726
AT2G39530			Uncharacterised protein family...		Lus10031303 [exp]	13.6	0.8966

Compare expression of checked genes

Lus10013121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.