Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25620 473 / 2e-167 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT2G33700 310 / 3e-103 Protein phosphatase 2C family protein (.1) AT3G51470 298 / 4e-99 Protein phosphatase 2C family protein (.1) AT3G62260 267 / 1e-86 Protein phosphatase 2C family protein (.1.2) AT1G48040 235 / 3e-74 Protein phosphatase 2C family protein (.1) AT3G17250 223 / 8e-69 Protein phosphatase 2C family protein (.1) AT5G10740 143 / 3e-39 Protein phosphatase 2C family protein (.1) AT5G24940 139 / 5e-37 Protein phosphatase 2C family protein (.1) AT1G18030 136 / 1e-36 Protein phosphatase 2C family protein (.1.2) AT2G25070 134 / 5e-36 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008091 [exp] 641 / 0 AT2G25620 488 / 1e-173 DNA-binding protein phosphatase 1 (.1) Lus10001682 [exp] 338 / 3e-114 AT2G25620 381 / 6e-131 DNA-binding protein phosphatase 1 (.1) Lus10016030 [exp] 322 / 1e-107 AT2G33700 550 / 0.0 Protein phosphatase 2C family protein (.1) Lus10030731 [exp] 319 / 1e-106 AT2G33700 553 / 0.0 Protein phosphatase 2C family protein (.1) Lus10013213 [exp] 317 / 9e-106 AT2G33700 541 / 0.0 Protein phosphatase 2C family protein (.1) Lus10012244 [exp] 309 / 3e-102 AT2G33700 533 / 0.0 Protein phosphatase 2C family protein (.1) Lus10038058 [exp] 234 / 1e-73 AT3G62260 442 / 4e-155 Protein phosphatase 2C family protein (.1.2) Lus10009993 [exp] 231 / 2e-72 AT3G62260 446 / 1e-156 Protein phosphatase 2C family protein (.1.2) Lus10030115 [exp] 229 / 2e-72 AT2G25620 234 / 1e-74 DNA-binding protein phosphatase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G033000 [exp] 523 / 0 AT2G25620 478 / 3e-169 DNA-binding protein phosphatase 1 (.1) Potri.006G248400 [exp] 522 / 0 AT2G25620 478 / 5e-169 DNA-binding protein phosphatase 1 (.1) Potri.006G059600 [exp] 354 / 1e-120 AT2G25620 375 / 9e-129 DNA-binding protein phosphatase 1 (.1) Potri.018G115100 [exp] 340 / 2e-115 AT2G25620 350 / 4e-119 DNA-binding protein phosphatase 1 (.1) Potri.007G058700 [exp] 315 / 2e-105 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1) Potri.005G253700 [exp] 314 / 9e-105 AT2G33700 584 / 0.0 Protein phosphatase 2C family protein (.1) Potri.002G007500 [exp] 305 / 1e-101 AT2G33700 560 / 0.0 Protein phosphatase 2C family protein (.1) Potri.005G102500 [exp] 303 / 9e-101 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.014G115500 [exp] 264 / 3e-85 AT3G62260 461 / 2e-162 Protein phosphatase 2C family protein (.1.2) Potri.002G190400 [exp] 253 / 4e-81 AT3G62260 436 / 6e-153 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10013124 pacid=23164169 polypeptide=Lus10013124 locus=Lus10013124.g ID=Lus10013124.BGIv1.0 annot-version=v1.0 ATGATGGAAGGAAATGTAGAAGAAAATGGCAGCTCTAGCAACAAGCCTCCTCCTCCTCCGCCGTATTGCCGCCAGTGTTTCACTAATGGTGGCGGCGCTG TCTCTTTGTCTTGTAAGAAGACTCTAGTTCGCCACCCATCTCTTGTGAAGACATCTACTACATTGGATATCTCTGTGGAATCCGAAGTTAGCATACAAGC ACATGTGGCTGATTACATCCCTATCGTCCGATCGGGAGCTTGTTCGGATATCGGATTTCGCCCGAACATGGAGGATGTGTACACTTGTATGGAAGATTTC GCAACTGATTATTGTCTCAAGCATCAAATTGATCATCCTAATGCCTTCTATGGGGTATTTGATGGCCATGGAGGAAAGCATGCTGCGGATTTTGCATGCC ACCATTTGCCAAGACTCATCATTGAGGATGAAGAATTTCCTAGTGATATAGAAAGGGTCATTTCGTCTGCTTTTCAGCAGACTGACAGTGCTTTCGCGGA GGCTTGCTCGCTCGATGCTGAACTTGCCTCCGGCACCACTGCATTAGCAGCACTTGTTGTTGGAAGGTTACTGGTGGTGGCAAATGCTGGAGATTGCCGG GCAGTGCTTTCTCGTCGGGGCAAAGCAGTGGAGATGTCTCGAGACCACAAGCCGGTTTGCATCCGGGAACAGGAACGCATCGAAGCATGTGGCGGATACG TTTCTGACGGATACCTAAACGGACAGCTCAACGTTGCCCGCGCCATAGGAGATTGGCACTTGGAAGGACTGAAAGGCACGGAAGGGATCGTCGGGCCACT AAGCTCCGAACCGGAGCTCATGACCACGAAACTCACACAAGATGACGAATTCCTTATCATAGGATGCGACGGGATATGGGATGTGTTCCGGAGCCAGAAT GCGGTGGACTTTGCCCGGCGGAGGCTTCAAGAACACAACGACCCGGTCATGTGCAGCCGGGATTTGGTGGATGAAGCGTTAAAAAGGAAGAGTGGTGACA ATCTTGCTGCCGTTGTTGTTTGTTTTCAGTCTGGCCCGCCTCCCAATTTGATCGCCCCTCGTCGGAGGGTGCAGAGGAGCTTCTCGGCCGAGGGTCTGAG ACAGCTGCAAAGCTTCTTGGATGACTTGGCGACTTGA
AA sequence Show only first row Show all	>Lus10013124 pacid=23164169 polypeptide=Lus10013124 locus=Lus10013124.g ID=Lus10013124.BGIv1.0 annot-version=v1.0 MMEGNVEENGSSSNKPPPPPPYCRQCFTNGGGAVSLSCKKTLVRHPSLVKTSTTLDISVESEVSIQAHVADYIPIVRSGACSDIGFRPNMEDVYTCMEDF ATDYCLKHQIDHPNAFYGVFDGHGGKHAADFACHHLPRLIIEDEEFPSDIERVISSAFQQTDSAFAEACSLDAELASGTTALAALVVGRLLVVANAGDCR AVLSRRGKAVEMSRDHKPVCIREQERIEACGGYVSDGYLNGQLNVARAIGDWHLEGLKGTEGIVGPLSSEPELMTTKLTQDDEFLIIGCDGIWDVFRSQN AVDFARRRLQEHNDPVMCSRDLVDEALKRKSGDNLAAVVVCFQSGPPPNLIAPRRRVQRSFSAEGLRQLQSFLDDLAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10013124 [exp]	0	1
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10004676 [exp]	1.0	0.9062
AT3G22550			Protein of unknown function (D...		Lus10012417 [exp]	3.3	0.8767
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10008091 [exp]	5.0	0.8663
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10027967 [exp]	7.2	0.8917
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10004649 [exp]	7.6	0.9040
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10001461 [exp]	9.1	0.8598
AT4G27585			SPFH/Band 7/PHB domain-contain...		Lus10032909 [exp]	13.5	0.8733
AT3G01810			unknown protein		Lus10041590 [exp]	13.9	0.8639
AT1G73240			unknown protein		Lus10026211 [exp]	14.5	0.8726
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10026773 [exp]	14.7	0.8939

Compare expression of checked genes

Lus10013124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.