Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11320 579 / 0 YUC4 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) AT4G32540 574 / 0 YUC1, YUC YUCCA 1, YUCCA, Flavin-binding monooxygenase family protein (.1) AT4G13260 488 / 2e-172 YUC2 YUCCA2, Flavin-binding monooxygenase family protein (.1) AT1G04180 485 / 4e-171 YUC9 YUCCA 9 (.1) AT1G04610 482 / 7e-170 YUC3 YUCCA 3 (.1) AT4G28720 474 / 8e-167 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT5G43890 471 / 1e-165 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1) AT5G25620 470 / 4e-165 YUC6 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) AT2G33230 460 / 3e-161 YUC7 YUCCA 7 (.1) AT1G21430 350 / 2e-118 YUC11 Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008092 [exp] 819 / 0 AT5G11320 575 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10011093 [exp] 497 / 6e-176 AT4G13260 566 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10023637 [exp] 495 / 2e-175 AT4G13260 542 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10035244 [exp] 493 / 5e-174 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10023695 [exp] 493 / 8e-174 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10022851 [exp] 474 / 1e-166 AT4G28720 666 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10024023 [exp] 473 / 1e-166 AT5G25620 479 / 7e-169 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Lus10041729 [exp] 472 / 2e-165 AT5G25620 473 / 6e-166 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Lus10011274 [exp] 458 / 1e-160 AT4G28720 643 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G248200 [exp] 630 / 0 AT5G11320 598 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.018G033200 [exp] 614 / 0 AT5G11320 546 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.006G243400 [exp] 507 / 9e-180 AT5G25620 608 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G036800 [exp] 501 / 5e-177 AT5G25620 576 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.002G254200 [exp] 493 / 2e-174 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Potri.008G174600 [exp] 486 / 2e-171 AT1G04610 686 / 0.0 YUCCA 3 (.1) Potri.007G028200 [exp] 484 / 6e-171 AT5G25620 495 / 5e-175 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.010G062400 [exp] 471 / 6e-164 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.016G003300 [exp] 353 / 6e-120 AT1G21430 436 / 7e-153 Flavin-binding monooxygenase family protein (.1) Potri.002G207400 [exp] 352 / 1e-119 AT1G48910 429 / 3e-150 YUCCA 10, Flavin-containing monooxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00743 [flax] [poplar] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Lus10013125 pacid=23164150 polypeptide=Lus10013125 locus=Lus10013125.g ID=Lus10013125.BGIv1.0 annot-version=v1.0 ATGAATCCTTCCACGCAAACCAAACAGAGGAAACAAGTGTGGGTTAACGGAGCAATCATCGTCGGAGCAGGCCCGTCGGGGCTAGCAACCGCCGCGTGTC TGTCACAACACGGCGTGCCGTCGTTAATCCTTGAGAAATCCGACTGCATCGCTTCTCTCTGGCAGCACAAAACCTACGACCGGCTCAAACTCCACCTCCC CAAACATTTCTGCCAGCTCCCGCTCATGGGTTTCCCCGATGACTTCCCCAAATATCCGACCAAGCACCAGTTCTTAACTTACTTACAATCCTACGCCGCC CATTTCAACATCCGGCCCATCTTCAACCAGTCCGTCTCCGCCGCGGAATTCGACCCTTCCGCCGCCATGTGGATGGTTCACACCGACGAGTTCCTCTACA TTTCCCGGTGGTTGGTCGTCGCCACGGGGGAAAACGCAGTTCCCGTCGTCCCTGAAATCTCCGGGATGGGGAAGTTCAAAGGGCGCGTGGTTCACACGAG CGAGTATAAATCGGCGAAAGAGTTCGCCGGCCAGAAAGTTCTCGTCGTTGGGTGTGGAAATTCCGGCATGGAAGTTAGCCTTGACCTTTGCCGGAACAAT GCGGTGCCTTACATGGTTGTTCGGAACACGGTGCACGTTTTGCCGAGGGAGATGATGGGAATGTCGACGTTCGGAGTAGCGATGGCGCTGCTGAAATGGC TGCCGTTGAGATTCGTCGACAGAGTATTGTTATCGGCGGCGAGTTTGTTCTTGGGGAACACAGACGAATTGGGCCTCCGGCGGCCCAAAACCGGGCCGTT AGAGCTCAAGAATGTCACCGGGAAAACTCCGGTCCTTGATGTTGGTGCTCTGTCGCAAATTAGATCCAGCAAGATTAAGGTGATGGAGGGTGTAAAGGAG ATTACAAAAACCGGAGCCAAATTCTTGGATGGACAAGAGAAGGAGTTTGATTCAATCATTTTGGCTACTGGGTACAAGAGCAATGTCCCCACTTGGCTCA AGGGGAGCGATTTCTTCACGGAGGAAGGGATGCCGAGGAAGGAGTTTCCTAACGGGTGGAAAGGGGAGGACGGATTGTATACGGTGGGCTTCACGAGAAG AGGGTTGCTGGGAACGGCGTCCGACGCCGTTAAGATTGCTGGTGACGTGGCTGGTCAGTGGAGGAATATTAAGGATTGTTGTAATTCCCATATTATCCTC TTGAGATCACCGTCCTGA
AA sequence Show only first row Show all	>Lus10013125 pacid=23164150 polypeptide=Lus10013125 locus=Lus10013125.g ID=Lus10013125.BGIv1.0 annot-version=v1.0 MNPSTQTKQRKQVWVNGAIIVGAGPSGLATAACLSQHGVPSLILEKSDCIASLWQHKTYDRLKLHLPKHFCQLPLMGFPDDFPKYPTKHQFLTYLQSYAA HFNIRPIFNQSVSAAEFDPSAAMWMVHTDEFLYISRWLVVATGENAVPVVPEISGMGKFKGRVVHTSEYKSAKEFAGQKVLVVGCGNSGMEVSLDLCRNN AVPYMVVRNTVHVLPREMMGMSTFGVAMALLKWLPLRFVDRVLLSAASLFLGNTDELGLRRPKTGPLELKNVTGKTPVLDVGALSQIRSSKIKVMEGVKE ITKTGAKFLDGQEKEFDSIILATGYKSNVPTWLKGSDFFTEEGMPRKEFPNGWKGEDGLYTVGFTRRGLLGTASDAVKIAGDVAGQWRNIKDCCNSHIIL LRSPS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Lus10013125 [exp]	0	1
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10033736 [exp]	1.0	0.9765
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10014047 [exp]	1.4	0.9726
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Lus10006381 [exp]	3.6	0.9240
AT1G67040			unknown protein		Lus10033565 [exp]	4.2	0.9524
AT1G71760			unknown protein		Lus10004010 [exp]	5.5	0.9189
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10036769 [exp]	6.0	0.9457
AT3G63480			ATP binding microtubule motor ...		Lus10035343 [exp]	6.3	0.9483
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Lus10028181 [exp]	8.4	0.9341
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10040333 [exp]	8.7	0.9491
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10031390 [exp]	9.5	0.9416

Compare expression of checked genes

Lus10013125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.