Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32235 68 / 1e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008093 [exp] 446 / 1e-158 AT2G32235 76 / 2e-15 unknown protein Lus10022042 [exp] 118 / 2e-32 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G028100 [exp] 92 / 1e-21 AT2G32235 63 / 2e-11 unknown protein Potri.018G147100 [exp] 84 / 6e-19 AT2G32235 58 / 4e-10 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013126 pacid=23164141 polypeptide=Lus10013126 locus=Lus10013126.g ID=Lus10013126.BGIv1.0 annot-version=v1.0 ATGAGCAATCCCATTGAATCACAGAGCGAGAAGAAGATGAGCTCCGGCGACGATCTCAATCAAGATTTCAAGACCGACGAATCAATCGATCTCGGCGTTC TCCACTTGAACCCCGATCACCACCACCACCGCCACAGCTCCCACTCTCGCTGCTCCTCCTGCGGTTGCAACGGCACCCCATCCTCCGCCGCCAAATCCAA CAAACGCCGCTCGACGGAGTCCATTCCGTTGGAGGTCGAGGAGAATCCGTTTCGAAAATCCCCGATGCAGTTACCGAAGAGGCCCAAGCGACTCGTGTTC GATCCTCCCGAATCCCTCTCCAGCTTTTCGATCCCTCCCGGATTCTCCAAGATCACTCTCCCTCCCGCCGCCGCCCAGCCGGAATCCGCCGCCCCTCCCG GATACTTCAAGATCACTCTCCCTCCCACTGCCGCACAGCCGGAATCCGCCGCCAATCCCAATCTCCGGCGATCGCCTCTGCAAATCTCTGGATCGGACTT CGGGACTTTCTCTCAAGACCTAACTCGCCAATCGCCGCCGCCGGACGGGACCAGAAATGTCGAGACAAACGATTCCTCCGCCACGCCGTCGTCCAAGGCC GCCGGAACGCCTCCACTCCCGCCGCTGAGGAGAGCTTGGTCGCTACCGTCGCCGAAAAACCCTGAACGCTCAACTTCAAGCGACGTCGTTGTACCCCAGC CTCAACTCCACGTAGAGAAGCTGAAGGTAATAGGGGACTGTATCAAGGAGTTAGCTAAGTGGTTGGATGAACGTCAGACTGTTGAAGAGATCAAGCCAGT CAATAATAAGCAAGAAGAGGAAGTTTCGGGTGATGATGATTCAGCTAAGCAGGATGGATCAGAAACTGCTGGATGTGAAGAATCTGTGAATGTGGAGAGA ACTGCGGAGTGCTTGATCATAAACTTCAAGTGTCCATGCAAGAAAGGATACCAGATTCTTCTCTCTGGAACCAGCTGCTACTACAAGCTCATATAG
AA sequence Show only first row Show all	>Lus10013126 pacid=23164141 polypeptide=Lus10013126 locus=Lus10013126.g ID=Lus10013126.BGIv1.0 annot-version=v1.0 MSNPIESQSEKKMSSGDDLNQDFKTDESIDLGVLHLNPDHHHHRHSSHSRCSSCGCNGTPSSAAKSNKRRSTESIPLEVEENPFRKSPMQLPKRPKRLVF DPPESLSSFSIPPGFSKITLPPAAAQPESAAPPGYFKITLPPTAAQPESAANPNLRRSPLQISGSDFGTFSQDLTRQSPPPDGTRNVETNDSSATPSSKA AGTPPLPPLRRAWSLPSPKNPERSTSSDVVVPQPQLHVEKLKVIGDCIKELAKWLDERQTVEEIKPVNNKQEEEVSGDDDSAKQDGSETAGCEESVNVER TAECLIINFKCPCKKGYQILLSGTSCYYKLI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32235			unknown protein		Lus10013126 [exp]	0	1
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10016682 [exp]	3.6	0.9504
AT1G73160			UDP-Glycosyltransferase superf...		Lus10032187 [exp]	4.0	0.9491
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10020673 [exp]	7.7	0.9366
AT1G70770			Protein of unknown function DU...		Lus10001593 [exp]	8.7	0.9417
AT1G27090			glycine-rich protein (.1)		Lus10037224 [exp]	9.3	0.9429
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10030551 [exp]	10.9	0.9315
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10036976 [exp]	11.2	0.9401
AT5G59380		MBD6, ATMBD6	methyl-CPG-binding domain 6 (....		Lus10005460 [exp]	12.6	0.9307
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10035118 [exp]	14.4	0.9304
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Lus10042572 [exp]	14.8	0.9236

Compare expression of checked genes

Lus10013126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.