Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25120 146 / 2e-44 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008094 [exp] 303 / 5e-106 AT3G25120 191 / 5e-62 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G246000 [exp] 199 / 5e-65 AT3G25120 173 / 4e-55 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [flax] [poplar] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Lus10013127 pacid=23164174 polypeptide=Lus10013127 locus=Lus10013127.g ID=Lus10013127.BGIv1.0 annot-version=v1.0 ATGGCTTCAGGCGGTGATGCAAAGCCTCCGCGACGAGACGTCGGAGAACGGCGATCATCCGCGCCGCCTTCTCCTTCATTCTACGATGATTGGAAGAAGC GTATAATACTCCCAACTATTCTTGCAGGAGCTTGCGGTGGAGGATTTGGGTTGTTGTCTAAGCATCGGAATGGGCAAGGACTTTCTGCCGTTTCTGCTGC TTACACTGCTAATTTCGCCATTGTCACTGGCTGCTACTGCGGGGCAAGGGAATTCGTAAGAGTAACCCGTAAATCAGACTATGACGATCTGCTAAACTCT GCCATTGCTGGGTTCAGTACTGGTGCTCTCCTCGGCCGTTTCCAAGCGGGTCAGATGGGCGCAATCAGGTACTCGATCATGTTCAGCATCGCAGGTACTG CAGTAGATTACGCTACAATCAAGCTGAGACCGAGATTAAGGGGCTGGAAAGAGTCGATATTCGGGGACGAAAACAACAACGGATGGAAGTTGCCGGTATG GTCGCCGATACAAGTGCTTGACGAGGAGGCTATGGCTAAGAAAGAAGCTCAAGAGAAGGAATTTAATGCACAAAGAGCAGCGATTCTTAAGCTGACAAAA GAAGAGTCGTGA
AA sequence Show only first row Show all	>Lus10013127 pacid=23164174 polypeptide=Lus10013127 locus=Lus10013127.g ID=Lus10013127.BGIv1.0 annot-version=v1.0 MASGGDAKPPRRDVGERRSSAPPSPSFYDDWKKRIILPTILAGACGGGFGLLSKHRNGQGLSAVSAAYTANFAIVTGCYCGAREFVRVTRKSDYDDLLNS AIAGFSTGALLGRFQAGQMGAIRYSIMFSIAGTAVDYATIKLRPRLRGWKESIFGDENNNGWKLPVWSPIQVLDEEAMAKKEAQEKEFNAQRAAILKLTK EES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25120			Mitochondrial import inner mem...		Lus10013127 [exp]	0	1
AT1G24050			RNA-processing, Lsm domain (.1...		Lus10010705 [exp]	2.6	0.8958
AT1G05205			unknown protein		Lus10039669 [exp]	7.7	0.8833
AT5G16870			Peptidyl-tRNA hydrolase II (PT...		Lus10009246 [exp]	8.1	0.8950
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10015667 [exp]	9.5	0.8894
AT3G03100			NADH:ubiquinone oxidoreductase...		Lus10030358 [exp]	10.6	0.8722
AT1G19860	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10024316 [exp]	11.2	0.8517
AT1G56440		TPR5	tetratricopeptide repeat 5, Te...		Lus10010915 [exp]	14.5	0.8591
AT3G58680		MBF1B, ATMBF1B	multiprotein bridging factor 1...		Lus10013686 [exp]	15.7	0.8728
					Lus10022462 [exp]	17.7	0.8612
AT3G04780			Protein of unknown function (D...		Lus10020246 [exp]	18.7	0.8427

Compare expression of checked genes

Lus10013127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.