Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25625 61 / 3e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008096 [exp] 205 / 8e-69 AT2G25625 61 / 3e-12 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G248300 [exp] 104 / 2e-29 AT2G25625 84 / 2e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013129 pacid=23164131 polypeptide=Lus10013129 locus=Lus10013129.g ID=Lus10013129.BGIv1.0 annot-version=v1.0 ATGGCCATCACTTGCTCTTTGATCAACCGCCTCCCTCCCTCACCGCCGGCGACGTCCTCTTCCAACCCAAATCATCCTCCTTCGAATTCCACCACCGCCC CAGCATCGATCCCATGGTTCAAGAGCGATAAGTTGAAGAGCAGATGCATAGCAAGCGTGGCATGCATAGTGATCGGCCTTCACACCAACTGGGCCATCGC CGCCGGCGGAGACGTACCGGCGGAGAAAGTTATGACGGCGGAGAAGGTGTCAGCACCGAAGTGGAGCGACAAGAGGATGTGTCCTGCGTGGCAACTGAAC TCGTTGGAGACTATTGTCCCGGAGGATCTCCCTCGGCCGTTTACTCGCCGGAGATGGGAGTCCGTTGAATTCCCCGGCGGGATGAATAATAATGATCGTT CCCCGGCGGCGCGTGGTCATGAAGTTGTTAGGGGTATTATTAAAGGTTGTTTCTCCATGTAA
AA sequence Show only first row Show all	>Lus10013129 pacid=23164131 polypeptide=Lus10013129 locus=Lus10013129.g ID=Lus10013129.BGIv1.0 annot-version=v1.0 MAITCSLINRLPPSPPATSSSNPNHPPSNSTTAPASIPWFKSDKLKSRCIASVACIVIGLHTNWAIAAGGDVPAEKVMTAEKVSAPKWSDKRMCPAWQLN SLETIVPEDLPRPFTRRRWESVEFPGGMNNNDRSPAARGHEVVRGIIKGCFSM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25625			unknown protein		Lus10013129 [exp]	0	1
AT5G48485		DIR1	DEFECTIVE IN INDUCED RESISTANC...		Lus10039511 [exp]	1.7	0.9360
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10041341 [exp]	2.8	0.9190
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10000705 [exp]	3.0	0.9213
AT1G27200			Domain of unknown function (DU...		Lus10013291 [exp]	4.5	0.9142
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10036067 [exp]	4.5	0.9021
AT3G19550			unknown protein		Lus10013900 [exp]	5.1	0.9244
AT2G25625			unknown protein		Lus10008096 [exp]	5.4	0.8801
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10024300 [exp]	6.2	0.8902
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Lus10007085 [exp]	7.0	0.9112
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Lus10034662 [exp]	7.9	0.8779

Compare expression of checked genes

Lus10013129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.