Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52820 189 / 6e-58 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G03070 184 / 6e-56 AOP1.1, AOP1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52800 177 / 4e-53 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52790 150 / 5e-43 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G15540 119 / 3e-31 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G28030 113 / 8e-29 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G80320 112 / 1e-28 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52810 105 / 2e-26 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G14130 96 / 8e-23 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G14120 83 / 6e-18 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016659 [exp] 192 / 4e-59 AT1G52820 445 / 1e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023024 [exp] 181 / 1e-54 AT1G52820 371 / 2e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10008097 [exp] 180 / 3e-54 AT1G52800 221 / 2e-70 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10013132 [exp] 169 / 4e-50 AT1G52800 222 / 8e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005516 [exp] 149 / 4e-42 AT1G52820 278 / 7e-92 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021025 [exp] 129 / 8e-35 AT1G52800 226 / 2e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023160 [exp] 120 / 2e-32 AT1G52820 244 / 1e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005776 [exp] 120 / 2e-31 AT1G52790 198 / 2e-61 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005773 [exp] 118 / 1e-30 AT1G52790 205 / 3e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G033400 [exp] 223 / 4e-71 AT1G52820 269 / 4e-89 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G248000 [exp] 218 / 2e-68 AT1G52820 280 / 6e-93 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176200 [exp] 197 / 2e-61 AT1G52820 496 / 8e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176500 [exp] 174 / 2e-52 AT1G52800 338 / 1e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G175800 [exp] 166 / 6e-49 AT1G52820 338 / 2e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176000 [exp] 163 / 4e-48 AT1G52790 460 / 2e-164 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176100 [exp] 162 / 2e-47 AT1G52800 286 / 5e-96 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G175900 [exp] 161 / 4e-47 AT1G52820 328 / 2e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G455400 [exp] 99 / 1e-23 AT1G14130 376 / 1e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G146600 [exp] 92 / 2e-21 AT1G14130 366 / 6e-128 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10013130 pacid=23164132 polypeptide=Lus10013130 locus=Lus10013130.g ID=Lus10013130.BGIv1.0 annot-version=v1.0 ATGATACCCACCATCGATCTCTCGAACATTACGGTCGAATCGAGTCGATCGACCGTAGAGCTGTGGGATGCCCTATGCAGAGAAGTCCGAGGGGCGTGCG AGGACTACGGGTGTTTTGAGGTGGTCAACGACAGAATACCTCGTGAGCTGCGAGCCGAGACGTTCCTATTGATAAGGAAAGTGTTCGAGCTTCCTTCGGA GGCTAAGGGTTTGAACATCAACCCTAAGCCATACCATAGCTACAGTGGGGTTCATTCTCTGTATGAGAGCTTGGGGATCGAAGATGCATCCAATGTTGGT TCACTTGAGGAGTTTGCCAATCTTATGTGGCCCAACGATGATCATCAACACTTTTGCAAAACAATTGGCGGCATCACAAAGCAGCTGGAGGAGCTGTGGC GTATGGTAGAGATGCTGATTCTGGACGGCTATGGCTTGAACACTAACAACAAAATGATGGATTGCAAGACTTTACTGCGTGTAATGAAGTACAAAGCACC TCCATTGGGGAAGCCAATGAGTGGACTCTATGGACACACTGACAAGCCACTCTGCACTTTTTTATGTGAAGATCGGATTTCTGGCCTCGAAATTCAGATC AAGCATCAAGGCAATGATGGTGATGGTGGTGGGGAGGACTATGTTTCGGTGCCGATAAGCCCTAGTTCGTTCGTCTTTATCGTTGGTGATCCTCTTATGG CGTGGAGCAACGGGAGAATGCATGCTGTGAAGCACAGAGTGACCATGAGCGGGGACGAAGATAGATACTCTATGGGAGCGTTTCAAGTTCCGGTGGTCGA AACGATCATCCGACCACCGAAAGATTTGGTGGATGATCACCGGAAGATGTTCAAAGATTTTGATTATATGGATTTCATAAACTACTCCTTGTCTAAGGAA GGGACTGACCTCCCTTCCCACCGCATGATCCATGCATTTGCTGGAATTTGA
AA sequence Show only first row Show all	>Lus10013130 pacid=23164132 polypeptide=Lus10013130 locus=Lus10013130.g ID=Lus10013130.BGIv1.0 annot-version=v1.0 MIPTIDLSNITVESSRSTVELWDALCREVRGACEDYGCFEVVNDRIPRELRAETFLLIRKVFELPSEAKGLNINPKPYHSYSGVHSLYESLGIEDASNVG SLEEFANLMWPNDDHQHFCKTIGGITKQLEELWRMVEMLILDGYGLNTNNKMMDCKTLLRVMKYKAPPLGKPMSGLYGHTDKPLCTFLCEDRISGLEIQI KHQGNDGDGGGEDYVSVPISPSSFVFIVGDPLMAWSNGRMHAVKHRVTMSGDEDRYSMGAFQVPVVETIIRPPKDLVDDHRKMFKDFDYMDFINYSLSKE GTDLPSHRMIHAFAGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10013130 [exp]	0	1
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10006669 [exp]	1.0	0.9586
					Lus10028788 [exp]	2.0	0.9475
AT4G25590		ADF7	actin depolymerizing factor 7 ...		Lus10014977 [exp]	3.3	0.8502
AT3G12720	MYB	ATMYB67, AtY53	myb domain protein 67 (.1)		Lus10038395 [exp]	3.9	0.8363
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10013916 [exp]	4.0	0.8973
					Lus10012943 [exp]	4.5	0.8567
					Lus10002344 [exp]	4.9	0.8878
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10008930 [exp]	4.9	0.9158
AT4G35160			O-methyltransferase family pro...		Lus10018629 [exp]	5.0	0.8966
					Lus10008841 [exp]	6.2	0.8225

Compare expression of checked genes

Lus10013130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.