Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52800 196 / 6e-61 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52820 195 / 2e-60 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G03070 184 / 4e-56 AOP1.1, AOP1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52790 175 / 1e-52 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G80320 153 / 4e-44 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52810 138 / 1e-38 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G28030 136 / 9e-38 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G15540 129 / 4e-35 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19010 114 / 5e-29 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT3G21420 105 / 1e-25 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008097 [exp] 565 / 0 AT1G52800 221 / 2e-70 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10016659 [exp] 199 / 1e-61 AT1G52820 445 / 1e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023024 [exp] 186 / 7e-57 AT1G52820 371 / 2e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10013130 [exp] 172 / 3e-51 AT1G52820 200 / 3e-62 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005516 [exp] 158 / 2e-45 AT1G52820 278 / 7e-92 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023160 [exp] 141 / 2e-40 AT1G52820 244 / 1e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005776 [exp] 140 / 4e-39 AT1G52790 198 / 2e-61 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005773 [exp] 137 / 5e-38 AT1G52790 205 / 3e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021025 [exp] 129 / 6e-35 AT1G52800 226 / 2e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G033400 [exp] 352 / 9e-122 AT1G52820 269 / 4e-89 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G248000 [exp] 351 / 1e-120 AT1G52820 280 / 6e-93 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176200 [exp] 214 / 1e-67 AT1G52820 496 / 8e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176000 [exp] 186 / 7e-57 AT1G52790 460 / 2e-164 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G175900 [exp] 182 / 2e-55 AT1G52820 328 / 2e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G175800 [exp] 181 / 7e-55 AT1G52820 338 / 2e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176100 [exp] 166 / 5e-49 AT1G52800 286 / 5e-96 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176500 [exp] 165 / 1e-48 AT1G52800 338 / 1e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.004G146100 [exp] 119 / 6e-31 AT3G19000 374 / 5e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.004G146000 [exp] 112 / 4e-28 AT3G19000 357 / 3e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10013132 pacid=23164177 polypeptide=Lus10013132 locus=Lus10013132.g ID=Lus10013132.BGIv1.0 annot-version=v1.0 ATGGTGGATATCCCACTCATCAACCTGGCCGGAATCGCCGCCGTAACCGAGTGGCGGGAACTTTGCGACAAGGTAAGGGAGGCGTGCGAGACCCACGGCT GTTTCTGCATCAAGACTGACGAGATCTCCGGCGAGATGAGGGACAGGATGGTAAAAGCGCTGAGTCAACTCTTCGACTTGCCGGAGGAGACCAAGAAGCT CCACGTCCACCCCAAGCCTTACCGGAGCTACCTCGGAAAAAACGACGTCGTCCCTTACCTCGAGAGCTTCGGCATCGATCATTCCCCTCAGCATGATGAA ACTAAAGCCTTTTCTCAACTCATGTGGCCAGATGGAAACCCTTCTTTCAATGAAGCACTGAACGAGATGAGTACAAAGATGCTGGAGCTGAACCTCTTGC TGATGAAGATGATCTTCACCAGCTTCGGACTCCACAGCCAGCTGTACGAGACCTACGCGGCGGAGAGCATCAGCAACCTCCGCCTCATGAAGTACAAGGT CCCACCACCCACCACCGCTGCCCCAGCTCCCAGCCTGGTGGCCCACACTGACAAGAACGCTCTGACCATCCTAGGCCAGAACGATGTCCAGGGTCTGGAG ATCCAGACCAAAGATGACGGACAGTGGGTCCAGGTCGTGATCCCCGAAGGCGCGGTCATCGCCATCGTGGGTGACGCGCTCAAGGCGTGGAGCAACGGGA GGCTCCACGCTGTGAGGCACAGGGTGGTGACTAGAAGTGACAAGGAGAGGTACTCGTGGGGGATGTTTATGATGCCGAATGATTGTGTCACGATCGAGGT GGCCAAGGAGTTGGTGGACAAGGAGCATCCTTTGTTGTATCGGCCCTTTAACTATGCCGAGTTTCTGGCCTATTACATCGGTAAGTTGGGCGACGATGCT CTCGAGATTTATGCCGGTGTCCCGCCCATCGCGATTGCGTAG
AA sequence Show only first row Show all	>Lus10013132 pacid=23164177 polypeptide=Lus10013132 locus=Lus10013132.g ID=Lus10013132.BGIv1.0 annot-version=v1.0 MVDIPLINLAGIAAVTEWRELCDKVREACETHGCFCIKTDEISGEMRDRMVKALSQLFDLPEETKKLHVHPKPYRSYLGKNDVVPYLESFGIDHSPQHDE TKAFSQLMWPDGNPSFNEALNEMSTKMLELNLLLMKMIFTSFGLHSQLYETYAAESISNLRLMKYKVPPPTTAAPAPSLVAHTDKNALTILGQNDVQGLE IQTKDDGQWVQVVIPEGAVIAIVGDALKAWSNGRLHAVRHRVVTRSDKERYSWGMFMMPNDCVTIEVAKELVDKEHPLLYRPFNYAEFLAYYIGKLGDDA LEIYAGVPPIAIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Lus10013132 [exp]	0	1
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Lus10041794 [exp]	1.0	0.9490
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Lus10028345 [exp]	2.4	0.8882
AT3G17810		PYD1	pyrimidine 1 (.1)		Lus10041990 [exp]	2.4	0.8944
AT4G19380			Long-chain fatty alcohol dehyd...		Lus10035673 [exp]	7.1	0.8882
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10033184 [exp]	7.3	0.8813
					Lus10025501 [exp]	7.3	0.9039
AT1G78850			D-mannose binding lectin prote...		Lus10000579 [exp]	7.4	0.8722
AT3G50150			Plant protein of unknown funct...		Lus10010065 [exp]	7.9	0.8854
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10040468 [exp]	8.5	0.8919
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Lus10031052 [exp]	10.7	0.8414

Compare expression of checked genes

Lus10013132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.