Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26170 731 / 0 CYP711A1, MAX1 MORE AXILLARY BRANCHES 1, "cytochrome P450, family 711, subfamily A, polypeptide 1", cytochrome P450, family 711, subfamily A, polypeptide 1 (.1.2) AT2G45560 127 / 2e-31 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT5G57260 124 / 2e-30 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT3G26310 123 / 7e-30 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT5G24900 122 / 2e-29 ELA2, CYP714A2 EUI-like p450 A2, cytochrome P450, family 714, subfamily A, polypeptide 2 (.1) AT5G67310 115 / 2e-27 CYP81G1 "cytochrome P450, family 81, subfamily G, polypeptide 1", cytochrome P450, family 81, subfamily G, polypeptide 1 (.1) AT3G26300 113 / 1e-26 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT5G25120 112 / 4e-26 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT5G24910 108 / 4e-25 ELA1, CYP714A1 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) AT2G46960 108 / 6e-25 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008098 [exp] 998 / 0 AT2G26170 726 / 0.0 MORE AXILLARY BRANCHES 1, "cytochrome P450, family 711, subfamily A, polypeptide 1", cytochrome P450, family 711, subfamily A, polypeptide 1 (.1.2) Lus10026085 [exp] 126 / 6e-31 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10017961 [exp] 124 / 3e-30 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10005878 [exp] 123 / 8e-30 AT5G06900 440 / 1e-150 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10040868 [exp] 123 / 1e-29 AT5G06900 434 / 5e-148 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10035502 [exp] 119 / 1e-28 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10026084 [exp] 119 / 1e-28 AT2G26710 375 / 6e-125 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10030708 [exp] 117 / 6e-28 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10024577 [exp] 116 / 2e-27 AT4G12300 444 / 3e-152 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G226700 [exp] 799 / 0 AT2G26170 723 / 0.0 MORE AXILLARY BRANCHES 1, "cytochrome P450, family 711, subfamily A, polypeptide 1", cytochrome P450, family 711, subfamily A, polypeptide 1 (.1.2) Potri.018G062100 [exp] 796 / 0 AT2G26170 726 / 0.0 MORE AXILLARY BRANCHES 1, "cytochrome P450, family 711, subfamily A, polypeptide 1", cytochrome P450, family 711, subfamily A, polypeptide 1 (.1.2) Potri.005G037100 [exp] 130 / 3e-32 AT5G06900 383 / 4e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.005G037201 [exp] 130 / 3e-32 AT5G06900 382 / 6e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.014G020500 [exp] 120 / 4e-29 AT4G37370 462 / 2e-159 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G007900 [exp] 119 / 1e-28 AT4G37370 524 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G114400 [exp] 119 / 3e-28 AT4G12320 495 / 1e-171 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.001G118500 [exp] 118 / 3e-28 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.007G085000 [exp] 117 / 6e-28 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.005G045800 [exp] 114 / 1e-26 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10013133 pacid=23164180 polypeptide=Lus10013133 locus=Lus10013133.g ID=Lus10013133.BGIv1.0 annot-version=v1.0 ATGAGTGCTGAGGTGGGTTTTTCATCAAGCTACTTCTTTCCGGCCGGGGCAGTGCTGGCGACAGCGGCGATGGTGTTGGGGACGGTGGCGGTGTACTTGT ACGCGCCTTACTGGGGGGTGAGGAAGATCCCTGGTCCGCCTAACGTGCCGCTACTTGGACACCTCCCTCTGATGGCGAAATACGGCCCTGATGTCTTCTC TGTTCTTGCTAAGCAATATGGTCCCATTTACAGGTTTCATATGGGAAGGCAGCCACTGGTGATAATAGCAGATCCAGAGCTATGCAGAGAAGTAGGAATC AAGAAATTCAAACACATCCCAAACAGAAGCATCCCTTCACCAATTGCTTCATCTCCGCTCCACCAAAAGGGCCTCTTCTTCACAAGGGACAAAAGGTGGT CAACCATGAGAAACACCATCCTTTCAGTCTACCAGCCATCCCACCTGGCAGGGCTCATCCCCACCATGCAATCCTACATCGAGTCCGCCACATCGAACCT CTCGGACCAACAGGACATCACGTTCTCGAACCTCTCGCTCCAGCTCGCCACGGATGTCATTGGACAGGCTGCGTTCGGGGTCGAATTCGGCCTTTCTGAG AAGAAGGTCGAGGGTTCGACGAAGGTTGGTGGTGGCAGTCGTGGTGGGAGTAATCAAGATGAGGACGATGAAGTCCGAGTTTTGGACTTCATCAACCAGC ACATATACTCGACCACTCAGTTGAAGATGGACCTGTCCGGTTCGTTCTCTATCATTGTCGGACTTCTCCTTCCCATCCTGCAAGAGCCTTTCAGACAGAT CCTGAAGAGAATACCGCGAACAATGGACTGGAAAGTAGACAGGACGAACAGCAACATAAGCGGGAGGCTGGACGAGATAGTGGCCCAGAGGATGATGGAG AAGAACCGGGGCTCGAAGAAGGACTTCCTATCCCTCATCCTCAATGCGAGGGAGACAGAGTCTGAGGATGTCGCCCGGACTGTGTTTGCTAATGACTACA TAAGTGCAGTCACTTATGAGCATCTTCTTGCTGGCTCTGCGACCACTGCCTTCACGTTGTCTTCGGTGCTCTACTTGGTTGCTGGACATCTTGATGTTGA GGAGAAATTGGTGTCTGAAATTGATGCTTTTGGGCCAAAGGATCTTGTTCCAAGTGCTAGTGATCTTCAGCACAAGTTTCCTTACTTAGATCAGGTGGTG AAGGAATCAATGAGGTACTATTTGGTTTCTCCATTGATTGCCAGAGAGGTATCAACTGGTGTAGAAATTGGAGGATTCCATCTACCAAAGGGTACTTGGG TATGGTTGGCGCCGGGGGTTCTAGCAAAGGACCCGAAGAACTTCCCGGAGCCGGAGAATTTCAAACCGGAGAGGTTCGATCCCAACTGCGAAGAAGAGAA AGCGAGGCATCCTTACGCTTTCATCCCCTTCGGGATCGGCCCTCGAGCATGCATCGGCCAGAAGTTCTCCTTGCAAGAATTGAAGCTCTCGCTGATTCAT CTGTACCGGAATTACATTTTCCGGCACTCCCCCGTGATGGAAAAGCCGCTGGAATTGGAGTTTGGGATTGTTCTCAACTTCAAACATGGTGTCAAACTTA CAGTCACCAAACGAACATAG
AA sequence Show only first row Show all	>Lus10013133 pacid=23164180 polypeptide=Lus10013133 locus=Lus10013133.g ID=Lus10013133.BGIv1.0 annot-version=v1.0 MSAEVGFSSSYFFPAGAVLATAAMVLGTVAVYLYAPYWGVRKIPGPPNVPLLGHLPLMAKYGPDVFSVLAKQYGPIYRFHMGRQPLVIIADPELCREVGI KKFKHIPNRSIPSPIASSPLHQKGLFFTRDKRWSTMRNTILSVYQPSHLAGLIPTMQSYIESATSNLSDQQDITFSNLSLQLATDVIGQAAFGVEFGLSE KKVEGSTKVGGGSRGGSNQDEDDEVRVLDFINQHIYSTTQLKMDLSGSFSIIVGLLLPILQEPFRQILKRIPRTMDWKVDRTNSNISGRLDEIVAQRMME KNRGSKKDFLSLILNARETESEDVARTVFANDYISAVTYEHLLAGSATTAFTLSSVLYLVAGHLDVEEKLVSEIDAFGPKDLVPSASDLQHKFPYLDQVV KESMRYYLVSPLIAREVSTGVEIGGFHLPKGTWVWLAPGVLAKDPKNFPEPENFKPERFDPNCEEEKARHPYAFIPFGIGPRACIGQKFSLQELKLSLIH LYRNYIFRHSPVMEKPLELEFGIVLNFKHGVKLTVTKRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26170		CYP711A1, MAX1	MORE AXILLARY BRANCHES 1, "cyt...		Lus10013133 [exp]	0	1
AT5G15320			unknown protein		Lus10018064 [exp]	4.8	0.9355
AT1G31910			GHMP kinase family protein (.1...		Lus10012122 [exp]	8.0	0.9251
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10034374 [exp]	8.8	0.9230
AT1G24530			Transducin/WD40 repeat-like su...		Lus10036881 [exp]	9.9	0.9316
AT3G02430			Protein of unknown function (D...		Lus10012734 [exp]	12.3	0.9099
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10038538 [exp]	14.0	0.9279
AT2G43970			RNA-binding protein (.1.2)		Lus10025608 [exp]	18.7	0.9029
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10008188 [exp]	19.9	0.9246
AT5G51970			GroES-like zinc-binding alcoho...		Lus10027409 [exp]	20.1	0.9185
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10025526 [exp]	20.3	0.9222

Compare expression of checked genes

Lus10013133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.