Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21690 241 / 3e-77 ATGA3OX3 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) AT1G15550 233 / 6e-74 ATGA3OX1, GA4 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) AT1G80330 214 / 2e-66 ATGA3OX4 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 4, gibberellin 3-oxidase 4 (.1) AT1G80340 206 / 2e-63 ATGA3OX2, GA4H ARABIDOPSIS THALIANA GIBBERELLIN-3-OXIDASE 2, gibberellin 3-oxidase 2 (.1) AT1G17010 151 / 2e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G13610 149 / 1e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G55290 149 / 1e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G78550 147 / 6e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17020 144 / 7e-40 ATSRG1, SRG1 senescence-related gene 1 (.1) AT2G38240 141 / 9e-39 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013135 [exp] 492 / 9e-176 AT1G15550 263 / 4e-86 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10008100 [exp] 483 / 1e-171 AT4G21690 273 / 8e-90 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10008099 [exp] 339 / 1e-116 AT4G21690 137 / 3e-38 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10011476 [exp] 265 / 5e-86 AT1G15550 412 / 1e-143 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10013137 [exp] 212 / 5e-68 AT4G21690 140 / 1e-40 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10013136 [exp] 168 / 1e-51 AT1G15550 97 / 6e-25 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10022292 [exp] 149 / 2e-41 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10040112 [exp] 145 / 5e-40 AT1G17020 332 / 1e-112 senescence-related gene 1 (.1) Lus10030995 [exp] 141 / 2e-38 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G033600 [exp] 318 / 3e-107 AT1G15550 328 / 2e-111 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.006G247700 [exp] 316 / 2e-106 AT1G15550 328 / 2e-111 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.001G176600 [exp] 260 / 3e-84 AT1G15550 452 / 1e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.003G057400 [exp] 257 / 6e-83 AT1G15550 451 / 2e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.001G007100 [exp] 150 / 4e-42 AT1G55290 496 / 4e-177 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G006901 [exp] 149 / 1e-41 AT3G13610 520 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.009G022800 [exp] 145 / 2e-40 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.010G023600 [exp] 144 / 1e-39 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G381700 [exp] 143 / 3e-39 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.001G378400 [exp] 139 / 4e-38 AT1G78440 404 / 1e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10013134 pacid=23164152 polypeptide=Lus10013134 locus=Lus10013134.g ID=Lus10013134.BGIv1.0 annot-version=v1.0 ATGGATAACATTTCGTCGACCACCGTGTCTATCACAGCTACTGTCGCTCATGCTAACCCACAACTGCCCCGCAAATGTGACCAAATCGTACCACTCGACT TCCACTCACTCCGCACCCATCCGGAGACCCATGTATGGCCGCCTGGCGAGGTCCATCAAGTGTTCCCGATTCCGGTGATCGACTTCTCCAGACCTTGCAG CCAGAAGCTAATTGTTGAGGCGTGCGAGAAGTGGGGTGTGTTCCAGTTGACAAACAACGGGATTCCTCCCGAATTATTGACGGAAGTTGAAGCTCAGGGG AGGCTGCTATTTTCCCTCCCGGCCAGCCAGAAATTGAAGGCCTTACGGTCTCCGAACGGAGCCAGCGGGTACACCCAACCTCTGTTTTCACACTTCTTCG AGAAGCATATGTGGAACGAAGCGTTCATCATCATCGGTTCTCCGGCAGATCACGCCGCACAACTTTGGCCGGATGATCAATGCCAAGTGTTCTGTGATGT CATCGAAGACTATAAACAGAGAATGACAGAGCTCGCCGCCAAACTTCTCCGACTAATCCTCGAGTCCCTCAACACCTCGGAGAAAGAACTCCGTCGTATC TCGTCGCCGGAAAGCACCATAACCAGCCTACAACTGAACTCATATCCGCCTTGCCCCGACCCGACCCAGGCAATGGGTTTGGCGCCCCACACCGACACTG CGTTGATCAGCCTTGTAAACCAAGGCAACGTCAAGGGTCAGGGTCTCCAAATCTTCGGCGGCGACGGCGAGTGGGGAATGGTACCTCCGGTTGCCGGAGC ATTGACCGTGAACGTCGGGGATCTCCTCAACGTCATTTCCAACGGCCGGTTTCACACAGTTCGACACAGGGTGGTGATTAAGGAGCCCATGCTGCACAGG GTTTCTGTTACATTGTTTTATTATCCGAAGCCGGAGTTTGTTTTGTCGCCGGTTGGGGATGGCTCCGGCGATGATGAAGCTCCGATGAACCGTTGGTTGA CTGTGAAGGAGTATAGAGAGTTGAAATTCAAAAAATATCATACTGCAGTTGAGTGTGAAGGAGTATTTGAGGTTGAAGTACAAAAACTATCAGAAGATGC AATGGAGTAG
AA sequence Show only first row Show all	>Lus10013134 pacid=23164152 polypeptide=Lus10013134 locus=Lus10013134.g ID=Lus10013134.BGIv1.0 annot-version=v1.0 MDNISSTTVSITATVAHANPQLPRKCDQIVPLDFHSLRTHPETHVWPPGEVHQVFPIPVIDFSRPCSQKLIVEACEKWGVFQLTNNGIPPELLTEVEAQG RLLFSLPASQKLKALRSPNGASGYTQPLFSHFFEKHMWNEAFIIIGSPADHAAQLWPDDQCQVFCDVIEDYKQRMTELAAKLLRLILESLNTSEKELRRI SSPESTITSLQLNSYPPCPDPTQAMGLAPHTDTALISLVNQGNVKGQGLQIFGGDGEWGMVPPVAGALTVNVGDLLNVISNGRFHTVRHRVVIKEPMLHR VSVTLFYYPKPEFVLSPVGDGSGDDEAPMNRWLTVKEYRELKFKKYHTAVECEGVFEVEVQKLSEDAME

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21690		ATGA3OX3	ARABIDOPSIS THALIANA GIBBERELL...		Lus10013134 [exp]	0	1
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10003585 [exp]	2.6	0.9738
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010799 [exp]	2.8	0.9346
AT3G05950			RmlC-like cupins superfamily p...		Lus10035280 [exp]	3.7	0.9738
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10013268 [exp]	4.6	0.9738
AT1G54460			TPX2 (targeting protein for Xk...		Lus10022003 [exp]	4.9	0.8009
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Lus10005476 [exp]	5.0	0.9710
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10003345 [exp]	5.3	0.9738
					Lus10014650 [exp]	6.9	0.9534
					Lus10027457 [exp]	7.5	0.9520
AT5G51490			Plant invertase/pectin methyle...		Lus10027204 [exp]	8.9	0.8703

Compare expression of checked genes

Lus10013134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.