Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15550 253 / 8e-82 ATGA3OX1, GA4 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) AT4G21690 239 / 7e-77 ATGA3OX3 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) AT1G80330 239 / 1e-76 ATGA3OX4 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 4, gibberellin 3-oxidase 4 (.1) AT1G80340 226 / 2e-71 ATGA3OX2, GA4H ARABIDOPSIS THALIANA GIBBERELLIN-3-OXIDASE 2, gibberellin 3-oxidase 2 (.1) AT1G78550 148 / 2e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G13610 145 / 2e-40 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G55290 144 / 5e-40 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G62380 142 / 1e-39 ATACO2, ACO2 ACC oxidase 2 (.1) AT1G12010 140 / 9e-39 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G60980 140 / 2e-38 ATGA20OX4 gibberellin 20-oxidase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008100 [exp] 486 / 1e-173 AT4G21690 273 / 8e-90 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10013134 [exp] 463 / 2e-164 AT4G21690 242 / 3e-77 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10011476 [exp] 266 / 1e-86 AT1G15550 412 / 1e-143 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10008099 [exp] 227 / 3e-73 AT4G21690 137 / 3e-38 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10013137 [exp] 215 / 1e-69 AT4G21690 140 / 1e-40 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10013136 [exp] 204 / 9e-66 AT1G15550 97 / 6e-25 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10022292 [exp] 149 / 1e-41 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10028068 [exp] 143 / 6e-40 AT5G08640 429 / 1e-151 flavonol synthase 1 (.1.2) Lus10025620 [exp] 143 / 7e-40 AT5G08640 424 / 2e-149 flavonol synthase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G033600 [exp] 333 / 2e-113 AT1G15550 328 / 2e-111 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.006G247700 [exp] 328 / 1e-111 AT1G15550 328 / 2e-111 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.001G176600 [exp] 264 / 3e-86 AT1G15550 452 / 1e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.003G057400 [exp] 261 / 5e-85 AT1G15550 451 / 2e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.009G022800 [exp] 155 / 3e-44 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.005G113900 [exp] 145 / 3e-40 AT3G51240 598 / 0.0 TRANSPARENT TESTA 6, flavanone 3-hydroxylase (.1.2) Potri.010G023600 [exp] 143 / 2e-39 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.019G014454 [exp] 142 / 3e-39 AT5G08640 454 / 1e-161 flavonol synthase 1 (.1.2) Potri.005G113700 [exp] 141 / 9e-39 AT3G51240 590 / 0.0 TRANSPARENT TESTA 6, flavanone 3-hydroxylase (.1.2) Potri.017G136000 [exp] 139 / 5e-38 AT1G06620 314 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10013135 pacid=23164173 polypeptide=Lus10013135 locus=Lus10013135.g ID=Lus10013135.BGIv1.0 annot-version=v1.0 ATGCCTACAACTACTACTACCTCCGAATCCCACCAAACAGTCCCTCTCGACTTCCACTCAATTCACACCCTCCCAGAGACCCACGTCTGGCCACCTGGCG CCAACGATAAAGTGTTCAGGATTCCTGTCGTTGACTTCTCGGGTCCTTTTGAGAGTAGCCGGAAGTTGGTCGTTGAGGCGTGCGAGAAGTGGGGCGTGTT CCAATTGACAAACCACGGGATTCCTTCCGAATTGTTGACGGAGGTTGAATCTCAGTCGAGACAGCTGTTTGCCCTCCCGGTGAGCCGGAAACTGAAGGCT TTACGGGCCCCGAACGGAGTCAGCGGGTATGGCCTGCCTCCCATTTCGCAGTTCTTTGAGAAGCGTATGTGGAATGAAGGGTTTACCATTGCTGGTTCTC CAAGGGATCATGTTGCGAAACTTTGGCCGGATGATCAATCCCGAGTGTTTTGCGATGTCATCGAAGACTTTCAACGGCGAATGACGGAGCTCGCCGCCAA AATTTTCCGACTAATCCTCGAGTCCCTCAACACCTCGGAGCAAGAAATCCGGCGTATCTCATCGCCGGAAAGCATCATAACCAGCGTACAAATGAACTCA TATCCGCCATGCCCCGACCCGAATCGGGCAATGGGTATGGTGGCCCACACCGACACTTCGTTGCTCACCCTCCTATACCAAGGCAGCGTCAAGGGTCTCC AAATCTTCAACGGCGGGGAGTGGGGAATGGTACCTCCGGTTGACGGAGCATTGACGGTGAACGTCGGGGATTTCCTCCACGTCATTTCCAACAGCCAGTT TCACCCGGTTCGGCACCGGGTGGTGATTAAGGAGGCCATGCTGCAAAGGGTTTCTGTTGCGTTGTTTTATTTTCCGAAGCCGGAGTTTGTTTTATCACCG TCCGGGGTAGCCTCCGGCGACGTCGAAGCTCCAATGAACCATTCCTTGACTGTGAAGGAGTATAGAGATTTGAAGTACAAAAGCTATCAGACTGCACTTG ATGCAATAAAGAAATAG
AA sequence Show only first row Show all	>Lus10013135 pacid=23164173 polypeptide=Lus10013135 locus=Lus10013135.g ID=Lus10013135.BGIv1.0 annot-version=v1.0 MPTTTTTSESHQTVPLDFHSIHTLPETHVWPPGANDKVFRIPVVDFSGPFESSRKLVVEACEKWGVFQLTNHGIPSELLTEVESQSRQLFALPVSRKLKA LRAPNGVSGYGLPPISQFFEKRMWNEGFTIAGSPRDHVAKLWPDDQSRVFCDVIEDFQRRMTELAAKIFRLILESLNTSEQEIRRISSPESIITSVQMNS YPPCPDPNRAMGMVAHTDTSLLTLLYQGSVKGLQIFNGGEWGMVPPVDGALTVNVGDFLHVISNSQFHPVRHRVVIKEAMLQRVSVALFYFPKPEFVLSP SGVASGDVEAPMNHSLTVKEYRDLKYKSYQTALDAIKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10013135 [exp]	0	1
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10002424 [exp]	1.4	1.0000
					Lus10005843 [exp]	2.0	1.0000
					Lus10022511 [exp]	2.4	1.0000
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10024231 [exp]	2.8	1.0000
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10036381 [exp]	3.2	1.0000
					Lus10010827 [exp]	6.0	1.0000
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10032836 [exp]	6.5	1.0000
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10012032 [exp]	7.7	0.9688
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036868 [exp]	7.9	0.9756
AT1G31550			GDSL-like Lipase/Acylhydrolase...		Lus10026550 [exp]	8.0	0.9902

Compare expression of checked genes

Lus10013135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.