Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21690 139 / 2e-40 ATGA3OX3 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) AT1G15550 125 / 5e-35 ATGA3OX1, GA4 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) AT1G80340 124 / 1e-34 ATGA3OX2, GA4H ARABIDOPSIS THALIANA GIBBERELLIN-3-OXIDASE 2, gibberellin 3-oxidase 2 (.1) AT1G80330 107 / 4e-28 ATGA3OX4 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 4, gibberellin 3-oxidase 4 (.1) AT4G25420 63 / 6e-12 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G78440 63 / 6e-12 ATGA2OX1 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) AT3G13610 61 / 2e-11 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43935 61 / 3e-11 ATFLS6, FLS6 flavonol synthase 6 (.1) AT1G17020 59 / 1e-10 ATSRG1, SRG1 senescence-related gene 1 (.1) AT5G08640 58 / 2e-10 ATFLS1, FLS flavonol synthase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008100 [exp] 325 / 7e-113 AT4G21690 273 / 8e-90 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10013134 [exp] 221 / 9e-72 AT4G21690 242 / 3e-77 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10013135 [exp] 215 / 6e-70 AT1G15550 263 / 4e-86 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10011476 [exp] 130 / 7e-37 AT1G15550 412 / 1e-143 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10023113 [exp] 125 / 3e-36 AT1G15550 171 / 1e-51 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10008099 [exp] 100 / 5e-26 AT4G21690 137 / 3e-38 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10023311 [exp] 70 / 2e-14 AT1G30040 381 / 6e-133 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Lus10025620 [exp] 69 / 5e-14 AT5G08640 424 / 2e-149 flavonol synthase 1 (.1.2) Lus10028068 [exp] 64 / 2e-12 AT5G08640 429 / 1e-151 flavonol synthase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G033600 [exp] 182 / 5e-57 AT1G15550 328 / 2e-111 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.006G247700 [exp] 181 / 1e-56 AT1G15550 328 / 2e-111 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.003G057400 [exp] 135 / 6e-39 AT1G15550 451 / 2e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.001G176600 [exp] 135 / 2e-38 AT1G15550 452 / 1e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.009G022800 [exp] 72 / 4e-15 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.011G095600 [exp] 71 / 1e-14 AT1G78440 404 / 4e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.010G023550 [exp] 66 / 1e-13 AT3G21420 210 / 6e-68 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G378400 [exp] 67 / 2e-13 AT1G78440 404 / 1e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.004G139600 [exp] 66 / 4e-13 AT5G08640 470 / 7e-168 flavonol synthase 1 (.1.2) Potri.019G014454 [exp] 66 / 4e-13 AT5G08640 454 / 1e-161 flavonol synthase 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013137 pacid=23164188 polypeptide=Lus10013137 locus=Lus10013137.g ID=Lus10013137.BGIv1.0 annot-version=v1.0 ATGGTGAACGTTTCATCCAACACTATGACTACAAAGTCTACAGTCGTCTCCGACGCCTACGCACAATCCCCACTCAAATCTCACCACATCGTCCCGCTCG ATTTCGACTCCATCCGAACCACCCTCCCGGAGACCCACGTCTGGCCTCCGGGAGCCGGTGACCAAGCCTTCCCTATTCCGGTCATCGACTTCTCGGAACC TTCCTCCAAAAATTCGCTTATTGTCGAGGCGTGCGAGAAGTGGGGTGTGTTCCAATTGACGAACCACGAGATTCCTTTCGAACTTTTGGCTGAGGTCGAA GCTCAGACGAGGCGGCTTTTCGCCCTCCCGGCCAGCCGGAAGGTCAAGGCTTTACGGTCTCCGAACGGGGTTAGTGGGTACGGTCAGGCTCGGATTTCTC AGTTCTTTGAGAAGCATATGTGGAACGAAGGGTTCACTGTGGTGGGGTCTCCGGCGGATCATGCTGCTCAGCTTTGGCCGGACGATGATCGCCGCCGTCA AGTGTTCTGGTGA
AA sequence Show only first row Show all	>Lus10013137 pacid=23164188 polypeptide=Lus10013137 locus=Lus10013137.g ID=Lus10013137.BGIv1.0 annot-version=v1.0 MVNVSSNTMTTKSTVVSDAYAQSPLKSHHIVPLDFDSIRTTLPETHVWPPGAGDQAFPIPVIDFSEPSSKNSLIVEACEKWGVFQLTNHEIPFELLAEVE AQTRRLFALPASRKVKALRSPNGVSGYGQARISQFFEKHMWNEGFTVVGSPADHAAQLWPDDDRRRQVFW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21690		ATGA3OX3	ARABIDOPSIS THALIANA GIBBERELL...		Lus10013137 [exp]	0	1
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10013136 [exp]	1.0	0.9244
					Lus10003450 [exp]	9.2	0.8555
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10013304 [exp]	11.5	0.8812
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10021505 [exp]	13.2	0.8893
AT1G78990			HXXXD-type acyl-transferase fa...		Lus10000557 [exp]	16.5	0.8739
AT2G18150			Peroxidase superfamily protein...		Lus10028337 [exp]	17.6	0.9026
AT1G16310			Cation efflux family protein (...		Lus10000061 [exp]	18.8	0.8919
AT5G18840			Major facilitator superfamily ...		Lus10012780 [exp]	20.3	0.8738
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026235 [exp]	24.0	0.8805
AT1G68710			ATPase E1-E2 type family prote...		Lus10035068 [exp]	26.2	0.8934

Compare expression of checked genes

Lus10013137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.