Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32570 134 / 7e-36 ZIM TIFY8 TIFY domain protein 8 (.1) AT3G17860 45 / 7e-05 ZIM TIFY6B, JAI3, JAZ3 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) AT1G70700 44 / 0.0001 ZIM TIFY7, JAZ9 JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY domain/Divergent CCT motif family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008101 [exp] 635 / 0 AT4G32570 155 / 2e-43 TIFY domain protein 8 (.1) Lus10013166 [exp] 45 / 6e-05 AT1G74950 118 / 2e-32 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10008129 [exp] 42 / 0.0005 AT1G74950 114 / 1e-30 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G247500 [exp] 270 / 9e-87 AT4G32570 187 / 3e-55 TIFY domain protein 8 (.1) Potri.018G033700 [exp] 259 / 1e-82 AT4G32570 191 / 9e-57 TIFY domain protein 8 (.1) Potri.015G035800 [exp] 48 / 7e-06 AT3G17860 219 / 5e-68 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.012G044900 [exp] 48 / 9e-06 AT3G17860 235 / 2e-74 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.008G133400 [exp] 46 / 2e-05 AT3G17860 169 / 1e-49 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.010G108200 [exp] 45 / 4e-05 AT3G17860 180 / 7e-54 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06200 [flax] [poplar] tify tify domain
Representative CDS sequence Show only first row Show all	>Lus10013138 pacid=23164166 polypeptide=Lus10013138 locus=Lus10013138.g ID=Lus10013138.BGIv1.0 annot-version=v1.0 ATGACGGTGGTCGTGGTGATTATGGCTCAGCAGAGTAAGGAAGCGAATGCAGCAATGTTCCATGATTTCTTGGGTATGAAGCCGGCGACGACCAGTAGTA ATAGTGTTAGAAACAATGATTCCTCCCCTGCAGCAGTTTTGGCTACTACTTCTAAAAACCACCCAGATGCATCTCCCTCTGCCGCCGGCGGCCGTGGTGG TGGACCTCTTTCCACCGTTTCCGATCTTGCCTCTGAAAGACAGGCTGCAAATCATCTAGAGGGGATTCCATACTACTTACCAAGAACCAGCGATGTTTCT ACTCAGGAGATGAGCAACAGATTAGCTGGAAGCAAGAGAAGCAATTCAGATTCGGTGCCAATTGGCCTTCATCATGACTCTGTTGAAAGCAGCAGCCTGC ATTTGATGAAGATGCAGATGCCTAGAAGGTCTTTAGATGATGAGAGTTTCTTTGGTACAAGGCCGAGTTCAGCTGCCTCACTTATATTGCAGCAACCTTC AAGTGTTTCGAAATGGGAAAGATCTGTGCCTACAGTGCAGCATCCTTATCGTGGGAGTCACTACGTTCCCTTTACGCAGCAATTCAGAAGCAGATTCGGG GGAGACACGACTGCTGGTGGACCGTCCGGTATCTCTCAGGCTGCTGCTGATGAAGGTTCAAGAACTGGCATCAAAGGACCTGGAATTTTGTGTTTTGATG CCAGTAGTCAGGGCCTAGCGTCTGGAAGTCGACAGATGACCATATTCTATGGCGGTCAAGCACATGTTTTCGACGATGTACACCCCAACAAGGCAGATGT GATAATGGCACTAGCTGGATCAAACGGGGGATCATGGTCGACCGCCTACTCACCAAAGCCAAGCAGTGGCAGCAAACCAGGCGGTGCTGAAACTTCGACC CACTGCAGACCAGGCGGTGGTGGAACTTCCACCGCGGCGAGTGGAGAATACGAAGCAGGTGGTGGTGCTGCAGCAAGAAGCAACGTAACATTATTGCAAC ACGAGCTCCGTAGAAGGCTGCCAGTCGCCACGAATTCCATGGTCCCGGGCGTGCACTCTAGCGACCGGATCATACCCTCAACAGGTGTTCATCATGGTGG TGGTAAGGAGACAAGAAATCAAATGCAGAAGGCAGGAGATGGGAGTAGTACAGGTGAAGAAACAAGGGAGGTTTGA
AA sequence Show only first row Show all	>Lus10013138 pacid=23164166 polypeptide=Lus10013138 locus=Lus10013138.g ID=Lus10013138.BGIv1.0 annot-version=v1.0 MTVVVVIMAQQSKEANAAMFHDFLGMKPATTSSNSVRNNDSSPAAVLATTSKNHPDASPSAAGGRGGGPLSTVSDLASERQAANHLEGIPYYLPRTSDVS TQEMSNRLAGSKRSNSDSVPIGLHHDSVESSSLHLMKMQMPRRSLDDESFFGTRPSSAASLILQQPSSVSKWERSVPTVQHPYRGSHYVPFTQQFRSRFG GDTTAGGPSGISQAAADEGSRTGIKGPGILCFDASSQGLASGSRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTAYSPKPSSGSKPGGAETST HCRPGGGGTSTAASGEYEAGGGAAARSNVTLLQHELRRRLPVATNSMVPGVHSSDRIIPSTGVHHGGGKETRNQMQKAGDGSSTGEETREV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32570	ZIM	TIFY8	TIFY domain protein 8 (.1)		Lus10013138 [exp]	0	1
AT4G32570	ZIM	TIFY8	TIFY domain protein 8 (.1)		Lus10008101 [exp]	2.0	0.8281
AT2G28130			unknown protein		Lus10021421 [exp]	4.9	0.7977
AT4G12680			unknown protein		Lus10025177 [exp]	8.2	0.6994
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Lus10015885 [exp]	8.5	0.7559
AT3G09890			Ankyrin repeat family protein ...		Lus10021508 [exp]	8.9	0.7347
AT4G03415			Protein phosphatase 2C family ...		Lus10018570 [exp]	11.0	0.7632
AT5G50340			ATP-dependent peptidases;nucle...		Lus10025843 [exp]	11.1	0.7845
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10037500 [exp]	11.5	0.7858
AT1G70150			zinc ion binding (.1)		Lus10029210 [exp]	26.3	0.7233
AT2G47210	MYB		myb-like transcription factor ...		Lus10021650 [exp]	26.5	0.7271

Compare expression of checked genes

Lus10013138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.