Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11310 595 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G71060 188 / 1e-52 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49730 186 / 6e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G77360 183 / 1e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65820 182 / 2e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20300 176 / 5e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15010 172 / 2e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22670 167 / 9e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G52640 164 / 1e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62680 159 / 8e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008102 [exp] 1003 / 0 AT5G11310 620 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001633 [exp] 210 / 2e-60 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039021 [exp] 190 / 4e-53 AT3G49730 215 / 5e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001588 [exp] 190 / 3e-52 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030603 [exp] 181 / 9e-50 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 175 / 9e-48 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021991 [exp] 172 / 5e-46 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011566 [exp] 171 / 2e-45 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10041193 [exp] 169 / 2e-45 AT3G22670 531 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G247400 [exp] 754 / 0 AT5G11310 638 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G114700 [exp] 215 / 4e-62 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G181900 [exp] 198 / 1e-56 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G066700 [exp] 192 / 1e-53 AT1G20300 213 / 5e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G245400 [exp] 184 / 5e-51 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G102700 [exp] 182 / 4e-50 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G079400 [exp] 181 / 1e-49 AT1G02420 649 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G053600 [exp] 177 / 7e-48 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G121400 [exp] 169 / 1e-44 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G176100 [exp] 163 / 6e-43 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10013139 pacid=23164164 polypeptide=Lus10013139 locus=Lus10013139.g ID=Lus10013139.BGIv1.0 annot-version=v1.0 ATGAAAGTTGCTCATTTCAGTCTCGATGCCACAAAGTTATTCGTCAACCATCGACGCCATCTCCACAAATTATTATCTCCCAACAATTTCCTACCCCCCC CCGCGGCCCCCCCCCGGGTGAGGCGGCGGTCGCCGCAGTCATTGCCAACCCCTCATCGCCACCATCCAAATCCCAATCCTGAACCCAACTACTCGCAGCA GGATTTCTCCGTCCTCTGCGGTCTTCTCAGGGACTCCAATCTAAATCCTGGTCCGTCCCTCGAAAATGCTCTGGAACAGACTGGAATCGAGCCGCAGCCA GCTCTGCTCGAGGCAATATTCAAGAACTTCGATTCGTCTCCCAAATTGCAGCACGCTTTGTTTCTGTGGGCAGAGAAGAGACCTGGGTTTCAGTTTTCTG AGGTGCTTTTCAATTCGATGGTTAATGCATTTGGTAAAGCTAGAGAATTCGACTCTGCTTGGTTCCTTGTTCTGGATAGGGTTGCTGCAGATGACGATAG TCGTTTGGTTTCCAGTGATACGTTTGCTGTTCTGATCAGAAGGTACGCTCGTACAGGTAGGATGAATGTTCATTGCTCAGGAACCCCTGAAGCTGCAATT AGGACATATGAGTATGCGAAAAATCTAGGCTTGGTTAGCAAGTCGGATTCTGGAATCCGCTTGTTCGAGATTCTATTGGATTCCCTGTGCAAGGAAGAGC ATGTTCGTGTGGCTACACAATATTTTCAGAGCAGAAAGAAGATCGAACAGAGTTGGGTTCCAACTATTCGCGTCTATAACATACTGCTAAACGGCTGGTT CAGATCAAGAAAGCTTAAACATGCAGAGAGGCTCTGGTTTGAGATGAAGAAGGAGAAAAATGTGAAACCGAGCGTTGTAACCTACGGTACCCTCGTAGAA GGGTACTGCAGGATGCGACGAGTCGAGGTGGCGCTTGATTTGGTGGACGAAATGAGAAGGGACGGAATGAAACCGAATTCCATCGTGTACAATCCGATCA TCGATGCACTTGCAGAAGCTGGAAGGTTCAAGGAGGCTTCCGGGATGATGGAACACTTCTCGCTCTGCGAATCGGGCCCTACCCTTTCGACGTATAATTC TTTAGTTAAAGGGTATTGCAAGGCTGGAGATCTCGTAGGAGCGAGTAAGATTCTTCGAATTATGATTGAGAGGGGTATTCTTCCGACTTGTACAATATAT AACTACTTCTTCAGGCATTTTTCGAGATTCGGGAAGATTGATGATGCAATGAATTTGTATAACAAGATGATTGCGTCTGGTTATGCTCCTGATAATCTTA CTTACAATCTTTTGTTAAAGATGCTCTGTGAAGAGGAAAGGCTAGACTTGGCTTTTCAGATTAGTAAAGAGATGGAAGTTAGAGGGTGCGATATGGACTT GGCTACTGGAACGATGCTGACTCATTTGCTGTGTAAGATGCACAGATTCGAAGAGGCAGTTGCGGAGTTTGAGAAGATGGTGAGGAGGGGTTTGGTTCCT CAGTACCTTACGTTCAAAAGATTGGATGGCGAGTTGAGCAAGCGAGGAATGATTAAGATGTCTCGGAAACTGAAGGGCATGATGTCGTCGGTGCCTCATT CGACGAAATTACCGGATAATTACAATGCTGAAAAGGACACATTGCGGCATGCAAGGAGGAAATCTATTCTGCAGAAGGCAGAAGCTATGTCTGAGATACT CAAGACGTGTAATGATCCAAGAGAACTTGTTAAGATTGTGACGGCTGAGAGTGGAGGAGGGTCCACATGCATGCCTGCTGATGATCTGCTGTTCGTGGAG TCTGACCAAGACATGATGGAGATTGTGTAA
AA sequence Show only first row Show all	>Lus10013139 pacid=23164164 polypeptide=Lus10013139 locus=Lus10013139.g ID=Lus10013139.BGIv1.0 annot-version=v1.0 MKVAHFSLDATKLFVNHRRHLHKLLSPNNFLPPPAAPPRVRRRSPQSLPTPHRHHPNPNPEPNYSQQDFSVLCGLLRDSNLNPGPSLENALEQTGIEPQP ALLEAIFKNFDSSPKLQHALFLWAEKRPGFQFSEVLFNSMVNAFGKAREFDSAWFLVLDRVAADDDSRLVSSDTFAVLIRRYARTGRMNVHCSGTPEAAI RTYEYAKNLGLVSKSDSGIRLFEILLDSLCKEEHVRVATQYFQSRKKIEQSWVPTIRVYNILLNGWFRSRKLKHAERLWFEMKKEKNVKPSVVTYGTLVE GYCRMRRVEVALDLVDEMRRDGMKPNSIVYNPIIDALAEAGRFKEASGMMEHFSLCESGPTLSTYNSLVKGYCKAGDLVGASKILRIMIERGILPTCTIY NYFFRHFSRFGKIDDAMNLYNKMIASGYAPDNLTYNLLLKMLCEEERLDLAFQISKEMEVRGCDMDLATGTMLTHLLCKMHRFEEAVAEFEKMVRRGLVP QYLTFKRLDGELSKRGMIKMSRKLKGMMSSVPHSTKLPDNYNAEKDTLRHARRKSILQKAEAMSEILKTCNDPRELVKIVTAESGGGSTCMPADDLLFVE SDQDMMEIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11310			Pentatricopeptide repeat (PPR)...		Lus10013139 [exp]	0	1
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10004694 [exp]	8.1	0.8690
AT1G53600			Tetratricopeptide repeat (TPR)...		Lus10008607 [exp]	11.6	0.8525
AT3G10250			Plant protein 1589 of unknown ...		Lus10031001 [exp]	16.1	0.8934
AT3G51980			ARM repeat superfamily protein...		Lus10023269 [exp]	19.4	0.8817
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Lus10017009 [exp]	20.8	0.8629
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10041845 [exp]	21.4	0.8843
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10028392 [exp]	24.6	0.8805
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10021253 [exp]	27.0	0.8726
AT2G01460			P-loop containing nucleoside t...		Lus10025598 [exp]	32.5	0.8694
AT5G20660			Zn-dependent exopeptidases sup...		Lus10009230 [exp]	37.0	0.8635

Compare expression of checked genes

Lus10013139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.